Information for 24-KTTGGAMKTKRGYCAM (Motif 29)

A C T G A C G T A C G T A T C G A C T G C G T A G T C A A C G T A C G T A C T G C T G A A C T G A G T C G T A C C G T A G T C A
Reverse Opposite:
A C G T A C G T A C T G T C A G A G T C A G C T G T A C C G T A G T C A C A G T A C G T A G T C A T G C C G T A C G T A G T A C
p-value:1e-8
log p-value:-1.976e+01
Information Content per bp:1.820
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.54%
Number of Background Sequences with motif0.6
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets78.8 +/- 8.5bp
Average Position of motif in Background68.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.66
Offset:0
Orientation:forward strand
Alignment:KTTGGAMKTKRGYCAM
CTTGGCANNNTGCCAA
 A C T G A C G T A C G T A T C G A C T G C G T A G T C A A C G T A C G T A C T G C T G A A C T G A G T C G T A C C G T A G T C A
A G T C G A C T C A G T A C T G C T A G T G A C G C T A A T G C G C A T A T C G C G A T A C T G G A T C G T A C G T C A C T G A

PB0134.1_Hnf4a_2/Jaspar

Match Rank:2
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--KTTGGAMKTKRGYCAM
NNATTGGACTTTNGNN--
 A C G T A C G T A C T G A C G T A C G T A T C G A C T G C G T A G T C A A C G T A C G T A C T G C T G A A C T G A G T C G T A C C G T A G T C A
C G A T C A G T G C T A C A G T G A C T C T A G C A T G G T C A G T A C A G C T G A C T G C A T C A G T C T A G T G A C T G A C A C G T A C G T

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:3
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:KTTGGAMKTKRGYCAM
-TTGGCATGGTGCCA-
 A C T G A C G T A C G T A T C G A C T G C G T A G T C A A C G T A C G T A C T G C T G A A C T G A G T C G T A C C G T A G T C A
A C G T G A C T A C G T A C T G A C T G A G T C C G T A G A C T A T C G A T C G C A G T A C T G A G T C A G T C C G T A A C G T

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:4
Score:0.59
Offset:5
Orientation:forward strand
Alignment:KTTGGAMKTKRGYCAM
-----AAYTAGGTCA-
 A C T G A C G T A C G T A T C G A C T G C G T A G T C A A C G T A C G T A C T G C T G A A C T G A G T C G T A C C G T A G T C A
A C G T A C G T A C G T A C G T A C G T G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A A C G T

Hnf4a/MA0114.3/Jaspar

Match Rank:5
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:KTTGGAMKTKRGYCAM
ATTGGACTTTGACCCC
 A C T G A C G T A C G T A T C G A C T G C G T A G T C A A C G T A C G T A C T G C T G A A C T G A G T C G T A C C G T A G T C A
C T G A A G C T G A C T T C A G T C A G T G C A T G A C A G C T G A C T A G C T T C A G G T C A G T A C G A T C A G T C A G T C

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:6
Score:0.58
Offset:1
Orientation:forward strand
Alignment:KTTGGAMKTKRGYCAM
-CTGGCAGNCTGCCA-
 A C T G A C G T A C G T A T C G A C T G C G T A G T C A A C G T A C G T A C T G C T G A A C T G A G T C G T A C C G T A G T C A
A C G T A G T C C G A T A C T G A T C G T G A C G C T A C A T G A T C G T G A C C G A T A C T G T A G C G T A C G T C A A C G T

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:7
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:KTTGGAMKTKRGYCAM--
--TGGACTTTGNNCTNTG
 A C T G A C G T A C G T A T C G A C T G C G T A G T C A A C G T A C G T A C T G C T G A A C T G A G T C G T A C C G T A G T C A A C G T A C G T
A C G T A C G T C G A T C T A G T C A G G T C A G T A C G A C T A G C T A C G T C T A G T C G A G T A C G A T C G A C T A G T C C G A T C A T G

RORA(var.2)/MA0072.1/Jaspar

Match Rank:8
Score:0.55
Offset:2
Orientation:forward strand
Alignment:KTTGGAMKTKRGYCAM
--TATAAGTAGGTCAA
 A C T G A C G T A C G T A T C G A C T G C G T A G T C A A C G T A C G T A C T G C T G A A C T G A G T C G T A C C G T A G T C A
A C G T A C G T C G A T C G T A C G A T G T C A C G T A A T C G A C G T C T G A A C T G A C T G A C G T A G T C C G T A T C G A

FOS::JUN/MA0099.2/Jaspar

Match Rank:9
Score:0.54
Offset:8
Orientation:reverse strand
Alignment:KTTGGAMKTKRGYCAM
--------TGAGTCA-
 A C T G A C G T A C G T A T C G A C T G C G T A G T C A A C G T A C G T A C T G C T G A A C T G A G T C G T A C C G T A G T C A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T A T C G G C T A A C T G A C G T G T A C C T G A A C G T

HNF4G/MA0484.1/Jaspar

Match Rank:10
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:KTTGGAMKTKRGYCAM-
--TGGACTTTGNNCTCN
 A C T G A C G T A C G T A T C G A C T G C G T A G T C A A C G T A C G T A C T G C T G A A C T G A G T C G T A C C G T A G T C A A C G T
A C G T A C G T C G A T C T A G T C A G G T C A G T A C G A C T A G C T A C G T T C A G T C A G G T C A G A T C G A C T A G T C G C A T