Information for 10-TGGCABTGGGCCA (Motif 9)

A C G T A C T G A C T G A G T C G C T A A G T C A C G T A T C G A C T G A C T G G T A C A G T C C G T A
Reverse Opposite:
C G A T A C T G A C T G G T A C A G T C A T G C C G T A T C A G C A G T A C T G A G T C A G T C C G T A
p-value:1e-11
log p-value:-2.545e+01
Information Content per bp:1.846
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.66%
Number of Background Sequences with motif0.6
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets55.0 +/- 29.0bp
Average Position of motif in Background18.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.77
Offset:-2
Orientation:forward strand
Alignment:--TGGCABTGGGCCA-
CTTGGCANNNTGCCAA
 A C G T A C G T A C G T A C T G A C T G A G T C G C T A A G T C A C G T A T C G A C T G A C T G G T A C A G T C C G T A A C G T
A G T C G A C T C A G T A C T G C T A G T G A C G C T A A T G C G C A T A T C G C G A T A C T G G A T C G T A C G T C A C T G A

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:2
Score:0.74
Offset:0
Orientation:forward strand
Alignment:TGGCABTGGGCCA-
TGGCACCATGCCAA
 A C G T A C T G A C T G A G T C G C T A A G T C A C G T A T C G A C T G A C T G G T A C A G T C C G T A A C G T
A C G T A C T G A C T G A G T C G C T A T A G C A T G C C T G A G C A T A C T G A G T C A G T C C G T A C G T A

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:3
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-TGGCABTGGGCCA
CTGGCAGNCTGCCA
 A C G T A C G T A C T G A C T G A G T C G C T A A G T C A C G T A T C G A C T G A C T G G T A C A G T C C G T A
A G T C C G A T A C T G A T C G T G A C G C T A C A T G A T C G T G A C C G A T A C T G T A G C G T A C G T C A

NFIX/MA0671.1/Jaspar

Match Rank:4
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--TGGCABTGGGCCA
NTTGGCANN------
 A C G T A C G T A C G T A C T G A C T G A G T C G C T A A G T C A C G T A T C G A C T G A C T G G T A C A G T C C G T A
A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T A C G T A C G T A C G T A C G T A C G T

Hic1/MA0739.1/Jaspar

Match Rank:5
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---TGGCABTGGGCCA
GGTTGGCAT-------
 A C G T A C G T A C G T A C G T A C T G A C T G A G T C G C T A A G T C A C G T A T C G A C T G A C T G G T A C A G T C C G T A
T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NFIA/MA0670.1/Jaspar

Match Rank:6
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---TGGCABTGGGCCA
NNTTGGCANN------
 A C G T A C G T A C G T A C G T A C T G A C T G A G T C G C T A A G T C A C G T A T C G A C T G A C T G G T A C A G T C C G T A
G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C A C G T A C G T A C G T A C G T A C G T A C G T

Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer

Match Rank:7
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---TGGCABTGGGCCA
GTAGGTCACTGGGTCA
 A C G T A C G T A C G T A C G T A C T G A C T G A G T C G C T A A G T C A C G T A T C G A C T G A C T G G T A C A G T C C G T A
A T C G A G C T C T G A C T A G A C T G A C G T G T A C G C T A A T G C A C G T C T A G C A T G T A C G C G A T A T G C C G T A

NFIC/MA0161.1/Jaspar

Match Rank:8
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-TGGCABTGGGCCA
TTGGCA--------
 A C G T A C G T A C T G A C T G A G T C G C T A A G T C A C G T A T C G A C T G A C T G G T A C A G T C C G T A
G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:9
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--TGGCABTGGGCCA
CTTGGCAA-------
 A C G T A C G T A C G T A C T G A C T G A G T C G C T A A G T C A C G T A T C G A C T G A C T G G T A C A G T C C G T A
A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0149.1_Myb_2/Jaspar

Match Rank:10
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---TGGCABTGGGCCA
NNNTGGCAGTTGGTNN
 A C G T A C G T A C G T A C G T A C T G A C T G A G T C G C T A A G T C A C G T A T C G A C T G A C T G G T A C A G T C C G T A
C T A G T A G C T C G A G A C T C T A G C T A G A G T C C T G A A C T G A C G T G A C T C T A G T C A G C A G T G T A C T A C G