Information for 5-CATAATTCTT (Motif 6)

T A G C C G T A G A C T G C T A C T G A C G A T C G A T A G T C A C G T A G C T
Reverse Opposite:
C T G A C G T A A C T G C G T A G C T A A G C T C G A T C T G A A C G T A T C G
p-value:1e-13
log p-value:-3.019e+01
Information Content per bp:1.844
Number of Target Sequences with motif22.0
Percentage of Target Sequences with motif2.92%
Number of Background Sequences with motif161.3
Percentage of Background Sequences with motif0.35%
Average Position of motif in Targets53.1 +/- 20.8bp
Average Position of motif in Background51.1 +/- 30.2bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:1
Score:0.72
Offset:-3
Orientation:forward strand
Alignment:---CATAATTCTT
GGCCATAAATCA-
 A C G T A C G T A C G T T A G C C G T A G A C T G C T A C T G A C G A T C G A T A G T C A C G T A G C T
C T A G T A C G A G T C G T A C T C G A A C G T G T C A G C T A G C T A C G A T A G T C G C T A A C G T

Hoxc9/MA0485.1/Jaspar

Match Rank:2
Score:0.70
Offset:-3
Orientation:forward strand
Alignment:---CATAATTCTT
GGCCATAAATCAC
 A C G T A C G T A C G T T A G C C G T A G A C T G C T A C T G A C G A T C G A T A G T C A C G T A G C T
C T A G T A C G G A T C G T A C C T G A A G C T T G C A C G T A G T C A C G A T G A T C G C T A A G T C

Hoxa9/MA0594.1/Jaspar

Match Rank:3
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--CATAATTCTT
GCCATAAATCA-
 A C G T A C G T T A G C C G T A G A C T G C T A C T G A C G A T C G A T A G T C A C G T A G C T
T A C G G A T C G T A C T C G A A C G T T G C A G C T A G T C A C G A T G A T C G C T A A C G T

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:4
Score:0.69
Offset:-3
Orientation:forward strand
Alignment:---CATAATTCTT
GGCCATAAATCA-
 A C G T A C G T A C G T T A G C C G T A G A C T G C T A C T G A C G A T C G A T A G T C A C G T A G C T
C T A G T A C G G A T C G T A C C T G A A G C T T G C A G C T A C G T A G C A T G A T C G C T A A C G T

PB0172.1_Sox1_2/Jaspar

Match Rank:5
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-CATAATTCTT----
CTATAATTGTTAGCG
 A C G T T A G C C G T A G A C T G C T A C T G A C G A T C G A T A G T C A C G T A G C T A C G T A C G T A C G T A C G T
G T A C A G C T C T G A G A C T G C T A C T G A G A C T A G C T T A C G A C G T A C G T T G C A A C G T A G T C T A C G

Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer

Match Rank:6
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:CATAATTCTT-
-NTAATKGTTT
 T A G C C G T A G A C T G C T A C T G A C G A T C G A T A G T C A C G T A G C T A C G T
A C G T A G T C G C A T T C G A T C G A C A G T C A T G T A C G G A C T G A C T A G C T

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:7
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-CATAATTCTT
TCATCAATCA-
 A C G T T A G C C G T A G A C T G C T A C T G A C G A T C G A T A G T C A C G T A G C T
G A C T G T A C T G C A A C G T G A T C G C T A T C G A A C G T A G T C C G T A A C G T

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:8
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--CATAATTCTT
GYCATCMATCAT
 A C G T A C G T T A G C C G T A G A C T G C T A C T G A C G A T C G A T A G T C A C G T A G C T
T A C G G A C T T G A C C G T A A C G T G A T C G T C A C G T A A C G T A T G C C G T A G A C T

PB0165.1_Sox11_2/Jaspar

Match Rank:9
Score:0.61
Offset:1
Orientation:forward strand
Alignment:CATAATTCTT-----
-AAAATTGTTATGAA
 T A G C C G T A G A C T G C T A C T G A C G A T C G A T A G T C A C G T A G C T A C G T A C G T A C G T A C G T A C G T
A C G T C G T A C T G A C T G A C T G A A C G T G A C T T C A G C G A T G A C T G C T A C A G T T C A G C T G A C G T A

OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer

Match Rank:10
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---CATAATTCTT--
ATGCATWATGCATRW
 A C G T A C G T A C G T T A G C C G T A G A C T G C T A C T G A C G A T C G A T A G T C A C G T A G C T A C G T A C G T
C G T A A C G T A C T G G T A C C G T A A C G T C G T A C G T A A C G T A C T G A G T C C G T A A C G T C T G A G C A T