Information for 6-SAGKGYGMTGTCTSCM (Motif 8)

A T C G C G T A A C T G A C T G A C T G A G T C A C T G T G A C A C G T A T C G A C G T A G T C A G C T T A C G A G T C G T A C
Reverse Opposite:
A C T G A C T G A T G C C T G A C T A G G T C A A T G C C G T A A C T G A G T C C T A G A G T C G T A C A G T C A C G T A T G C
p-value:1e-12
log p-value:-2.947e+01
Information Content per bp:1.841
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.87%
Number of Background Sequences with motif4.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets44.1 +/- 29.2bp
Average Position of motif in Background27.3 +/- 5.7bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.60
Offset:7
Orientation:forward strand
Alignment:SAGKGYGMTGTCTSCM
-------CTGTCTGG-
 A T C G C G T A A C T G A C T G A C T G A G T C A C T G T G A C A C G T A T C G A C G T A G T C A G C T T A C G A G T C G T A C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.59
Offset:5
Orientation:forward strand
Alignment:SAGKGYGMTGTCTSCM
-----VBSYGTCTGG-
 A T C G C G T A A C T G A C T G A C T G A G T C A C T G T G A C A C G T A T C G A C G T A G T C A G C T T A C G A G T C G T A C
A C G T A C G T A C G T A C G T A C G T T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:3
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:SAGKGYGMTGTCTSCM----
---NNTNNTGTCTGGNNTNG
 A T C G C G T A A C T G A C T G A C T G A G T C A C T G T G A C A C G T A T C G A C G T A G T C A G C T T A C G A G T C G T A C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:4
Score:0.55
Offset:7
Orientation:forward strand
Alignment:SAGKGYGMTGTCTSCM
-------TWGTCTGV-
 A T C G C G T A A C T G A C T G A C T G A G T C A C T G T G A C A C G T A T C G A C G T A G T C A G C T T A C G A G T C G T A C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T

Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer

Match Rank:5
Score:0.53
Offset:6
Orientation:reverse strand
Alignment:SAGKGYGMTGTCTSCM--
------SCTGTCARCACC
 A T C G C G T A A C T G A C T G A C T G A G T C A C T G T G A C A C G T A T C G A C G T A G T C A G C T T A C G A G T C G T A C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T A G C G A T C C G A T C A T G G C A T A G T C G T C A C T G A A G T C C T G A T A G C A G T C

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:6
Score:0.52
Offset:7
Orientation:forward strand
Alignment:SAGKGYGMTGTCTSCM----
-------CTGTCTGTCACCT
 A T C G C G T A A C T G A C T G A C T G A G T C A C T G T G A C A C G T A T C G A C G T A G T C A G C T T A C G A G T C G T A C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T

MTF1/MA0863.1/Jaspar

Match Rank:7
Score:0.52
Offset:4
Orientation:reverse strand
Alignment:SAGKGYGMTGTCTSCM--
----GTGCCGTGTGCAAA
 A T C G C G T A A C T G A C T G A C T G A G T C A C T G T G A C A C G T A T C G A C G T A G T C A G C T T A C G A G T C G T A C A C G T A C G T
A C G T A C G T A C G T A C G T C T A G A C G T C T A G G T A C G A T C A C T G A C G T A C T G G A C T A C T G A G T C C G T A T G C A G T C A

Klf12/MA0742.1/Jaspar

Match Rank:8
Score:0.52
Offset:-3
Orientation:reverse strand
Alignment:---SAGKGYGMTGTCTSCM
NANAAGGGCGTGGTC----
 A C G T A C G T A C G T A T C G C G T A A C T G A C T G A C T G A G T C A C T G T G A C A C G T A T C G A C G T A G T C A G C T T A C G A G T C G T A C
C G T A C G T A C G A T C G T A C G T A C T A G T C A G C T A G G A T C C A T G A C G T A T C G C A T G A G C T G T A C A C G T A C G T A C G T A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.51
Offset:8
Orientation:reverse strand
Alignment:SAGKGYGMTGTCTSCM----
--------TGTCTGDCACCT
 A T C G C G T A A C T G A C T G A C T G A G T C A C T G T G A C A C G T A T C G A C G T A G T C A G C T T A C G A G T C G T A C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T

KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer

Match Rank:10
Score:0.51
Offset:-2
Orientation:reverse strand
Alignment:--SAGKGYGMTGTCTSCM
NNVDGGGYGGGGCYN---
 A C G T A C G T A T C G C G T A A C T G A C T G A C T G A G T C A C T G T G A C A C G T A T C G A C G T A G T C A G C T T A C G A G T C G T A C
T A C G T G A C T C A G C T G A A C T G A C T G A C T G A G C T A C T G A C T G C T A G A C T G A G T C A G T C C T G A A C G T A C G T A C G T