Information for 5-GCMTGCCTGTATCTGA (Motif 6)

A C T G A T G C G T A C A C G T A C T G A G T C A G T C C A G T C T A G A C G T C G T A C G A T A G T C C A G T A T C G C G T A
Reverse Opposite:
C G A T A T G C G C T A C T A G C G T A C G A T T G C A A G T C G T C A A C T G C T A G A G T C C G T A A C T G T A C G G T A C
p-value:1e-13
log p-value:-3.109e+01
Information Content per bp:1.748
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.75%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets41.5 +/- 7.2bp
Average Position of motif in Background75.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0060.1_Smad3_1/Jaspar

Match Rank:1
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--GCMTGCCTGTATCTGA
NNTNNTGTCTGGNNTNG-
 A C G T A C G T A C T G A T G C G T A C A C G T A C T G A G T C A G T C C A G T C T A G A C G T C G T A C G A T A G T C C A G T A T C G C G T A
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.56
Offset:0
Orientation:forward strand
Alignment:GCMTGCCTGTATCTGA
VBSYGTCTGG------
 A C T G A T G C G T A C A C G T A C T G A G T C A G T C C A G T C T A G A C G T C G T A C G A T A G T C C A G T A T C G C G T A
T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T A C G T A C G T A C G T A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.56
Offset:2
Orientation:forward strand
Alignment:GCMTGCCTGTATCTGA
--CTGTCTGG------
 A C T G A T G C G T A C A C G T A C T G A G T C A G T C C A G T C T A G A C G T C G T A C G A T A G T C C A G T A T C G C G T A
A C G T A C G T A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T A C G T A C G T A C G T A C G T

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:4
Score:0.56
Offset:-5
Orientation:forward strand
Alignment:-----GCMTGCCTGTATCTGA
GTCATGCHTGRCTGS------
 A C G T A C G T A C G T A C G T A C G T A C T G A T G C G T A C A C G T A C T G A G T C A G T C C A G T C T A G A C G T C G T A C G A T A G T C C A G T A T C G C G T A
A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C A C G T A C G T A C G T A C G T A C G T A C G T

THAP1/MA0597.1/Jaspar

Match Rank:5
Score:0.54
Offset:2
Orientation:forward strand
Alignment:GCMTGCCTGTATCTGA
--CTGCCCGCA-----
 A C T G A T G C G T A C A C G T A C T G A G T C A G T C C A G T C T A G A C G T C G T A C G A T A G T C C A G T A T C G C G T A
A C G T A C G T A G T C G A C T C A T G G A T C G T A C G T A C C A T G A G T C G T C A A C G T A C G T A C G T A C G T A C G T

ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer

Match Rank:6
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:GCMTGCCTGTATCTGA--
---TGCCTGCGYCMCCTT
 A C T G A T G C G T A C A C G T A C T G A G T C A G T C C A G T C T A G A C G T C G T A C G A T A G T C C A G T A T C G C G T A A C G T A C G T
A C G T A C G T A C G T C A G T A C T G A G T C A G T C A C G T A C T G A T G C C T A G A G T C G A T C G T C A A G T C A G T C G C A T A C G T

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:7
Score:0.52
Offset:-2
Orientation:reverse strand
Alignment:--GCMTGCCTGTATCTGA
NNACTTGCCTT-------
 A C G T A C G T A C T G A T G C G T A C A C G T A C T G A G T C A G T C C A G T C T A G A C G T C G T A C G A T A G T C C A G T A T C G C G T A
T C G A G A T C T G C A A G T C G A C T A G C T A C T G A G T C G A T C G C A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:8
Score:0.52
Offset:2
Orientation:forward strand
Alignment:GCMTGCCTGTATCTGA
--TWGTCTGV------
 A C T G A T G C G T A C A C G T A C T G A G T C A G T C C A G T C T A G A C G T C G T A C G A T A G T C C A G T A T C G C G T A
A C G T A C G T A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T

GCM2/MA0767.1/Jaspar

Match Rank:9
Score:0.51
Offset:3
Orientation:reverse strand
Alignment:GCMTGCCTGTATCTGA
---TACCCGCATN---
 A C T G A T G C G T A C A C G T A C T G A G T C A G T C C A G T C T A G A C G T C G T A C G A T A G T C C A G T A T C G C G T A
A C G T A C G T A C G T G A C T C T G A A G T C G T A C G T A C T A C G A G T C T C G A A G C T T G C A A C G T A C G T A C G T

GCM1/MA0646.1/Jaspar

Match Rank:10
Score:0.50
Offset:2
Orientation:reverse strand
Alignment:GCMTGCCTGTATCTGA
--GTACCCGCATN---
 A C T G A T G C G T A C A C G T A C T G A G T C A G T C C A G T C T A G A C G T C G T A C G A T A G T C C A G T A T C G C G T A
A C G T A C G T T A C G A G C T T C G A T A G C T G A C G T A C C A T G A G T C C G T A A G C T T C A G A C G T A C G T A C G T