Motif 15

Information for 12-GCGCGCGCGCGCG (Motif 15)

Reverse Opposite:

p-value:	1e-3
log p-value:	-6.991e+00
Information Content per bp:	1.783
Number of Target Sequences with motif	5.0
Percentage of Target Sequences with motif	0.62%
Number of Background Sequences with motif	43.8
Percentage of Background Sequences with motif	0.09%
Average Position of motif in Targets	26.9 +/- 22.5bp
Average Position of motif in Background	48.5 +/- 42.4bp
Strand Bias (log2 ratio + to - strand density)	-0.2
Multiplicity (# of sites on avg that occur together)	1.00
Motif File:	file (matrix) reverse opposite
SVG Files for Logos:	forward logo reverse opposite

Matches to Known Motifs

PB0095.1_Zfp161_1/Jaspar

Match Rank:	1
Score:	0.83
Offset:	-2
Orientation:	forward strand
Alignment:	--GCGCGCGCGCGCG- TGGCGCGCGCGCCTGA

NRF1/MA0506.1/Jaspar

Match Rank:	2
Score:	0.78
Offset:	1
Orientation:	reverse strand
Alignment:	GCGCGCGCGCGCG -TGCGCAGGCGC-

NRF(NRF)/Promoter/Homer

Match Rank:	3
Score:	0.72
Offset:	0
Orientation:	forward strand
Alignment:	GCGCGCGCGCGCG GTGCGCATGCGC-

NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer

Match Rank:	4
Score:	0.72
Offset:	0
Orientation:	forward strand
Alignment:	GCGCGCGCGCGCG CTGCGCATGCGC-

Tcfl5/MA0632.1/Jaspar

Match Rank:	5
Score:	0.67
Offset:	1
Orientation:	forward strand
Alignment:	GCGCGCGCGCGCG -GGCACGTGCC--

PB0009.1_E2F3_1/Jaspar

Match Rank:	6
Score:	0.66
Offset:	-1
Orientation:	reverse strand
Alignment:	-GCGCGCGCGCGCG- ANCGCGCGCCCTTNN

PB0008.1_E2F2_1/Jaspar

Match Rank:	7
Score:	0.65
Offset:	1
Orientation:	reverse strand
Alignment:	GCGCGCGCGCGCG--- -NTCGCGCGCCTTNNN

Hes1/MA1099.1/Jaspar

Match Rank:	8
Score:	0.63
Offset:	1
Orientation:	reverse strand
Alignment:	GCGCGCGCGCGCG -NNCGCGTGNN--

POL006.1_BREu/Jaspar

Match Rank:	9
Score:	0.59
Offset:	3
Orientation:	reverse strand
Alignment:	GCGCGCGCGCGCG ---GGCGCGCT--

EGR3/MA0732.1/Jaspar

Match Rank:	10
Score:	0.58
Offset:	-1
Orientation:	reverse strand
Alignment:	-GCGCGCGCGCGCG- ANTGCGTGGGCGTNN