Information for 11-GGTTGCCATGGCD (Motif 14)

A T C G C T A G A G C T C G A T A C T G A G T C A G T C C T G A A C G T A C T G A C T G A G T C C G T A
Reverse Opposite:
G A C T A C T G A G T C G T A C C G T A A G C T C T A G A C T G A G T C C G T A T C G A A G T C T A G C
p-value:1e-5
log p-value:-1.368e+01
Information Content per bp:1.842
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.75%
Number of Background Sequences with motif19.8
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets68.7 +/- 13.3bp
Average Position of motif in Background51.2 +/- 32.9bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:1
Score:0.87
Offset:0
Orientation:forward strand
Alignment:GGTTGCCATGGCD-
NGTTGCCATGGCAA
 A T C G C T A G A G C T C G A T A C T G A G T C A G T C C T G A A C G T A C T G A C T G A G T C C G T A A C G T
A C T G T C A G A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:2
Score:0.85
Offset:0
Orientation:forward strand
Alignment:GGTTGCCATGGCD-
GGTTGCCATGGCAA
 A T C G C T A G A G C T C G A T A C T G A G T C A G T C C T G A A C G T A C T G A C T G A G T C C G T A A C G T
C A T G C T A G A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A

RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer

Match Rank:3
Score:0.82
Offset:-1
Orientation:forward strand
Alignment:-GGTTGCCATGGCD--
CGGTTGCCATGGCAAC
 A C G T A T C G C T A G A G C T C G A T A C T G A G T C A G T C C T G A A C G T A C T G A C T G A G T C C G T A A C G T A C G T
A G T C A T C G C T A G A G C T G A C T C T A G A G T C A G T C G C T A C A G T T C A G T C A G G A T C C T G A T C G A G A T C

Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer

Match Rank:4
Score:0.82
Offset:0
Orientation:reverse strand
Alignment:GGTTGCCATGGCD--
KGTTGCCATGGCAAC
 A T C G C T A G A G C T C G A T A C T G A G T C A G T C C T G A A C G T A C T G A C T G A G T C C G T A A C G T A C G T
A C T G C T A G A G C T G A C T C A T G A G T C A G T C G T C A C A G T C T A G T C A G G T A C C T G A T C G A G A T C

Rfx1/MA0509.1/Jaspar

Match Rank:5
Score:0.81
Offset:1
Orientation:reverse strand
Alignment:GGTTGCCATGGCD--
-GTTGCCATGGNAAC
 A T C G C T A G A G C T C G A T A C T G A G T C A G T C C T G A A C G T A C T G A C T G A G T C C G T A A C G T A C G T
A C G T A C T G A G C T G A C T C A T G A G T C A G T C C G T A C G A T C T A G T C A G T G A C C T G A T G C A G A T C

RFX5/MA0510.2/Jaspar

Match Rank:6
Score:0.78
Offset:0
Orientation:forward strand
Alignment:GGTTGCCATGGCD---
CGTTGCCATGGCAACG
 A T C G C T A G A G C T C G A T A C T G A G T C A G T C C T G A A C G T A C T G A C T G A G T C C G T A A C G T A C G T A C G T
A T G C C T A G A G C T G A C T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C T G A T G C A G A T C T A C G

RFX2/MA0600.2/Jaspar

Match Rank:7
Score:0.78
Offset:0
Orientation:forward strand
Alignment:GGTTGCCATGGCD---
CGTTGCCATGGCAACG
 A T C G C T A G A G C T C G A T A C T G A G T C A G T C C T G A A C G T A C T G A C T G A G T C C G T A A C G T A C G T A C G T
A T G C T C A G G A C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A C T G A G A T C T A C G

RFX3/MA0798.1/Jaspar

Match Rank:8
Score:0.77
Offset:0
Orientation:reverse strand
Alignment:GGTTGCCATGGCD---
CGTTGCCATGGCAACN
 A T C G C T A G A G C T C G A T A C T G A G T C A G T C C T G A A C G T A C T G A C T G A G T C C G T A A C G T A C G T A C G T
A T G C C T A G A G C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A C T G A G A T C T A C G

RFX4/MA0799.1/Jaspar

Match Rank:9
Score:0.75
Offset:0
Orientation:reverse strand
Alignment:GGTTGCCATGGCD---
CGTTGCCATGGCAACN
 A T C G C T A G A G C T C G A T A C T G A G T C A G T C C T G A A C G T A C T G A C T G A G T C C G T A A C G T A C G T A C G T
A T G C C T A G A G C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A C G T A G A T C T A C G

PB0055.1_Rfx4_1/Jaspar

Match Rank:10
Score:0.72
Offset:-2
Orientation:reverse strand
Alignment:--GGTTGCCATGGCD
NNCGTTGCTATGGNN
 A C G T A C G T A T C G C T A G A G C T C G A T A C T G A G T C A G T C C T G A A C G T A C T G A C T G A G T C C G T A
G C T A A G T C A T G C C T A G A G C T G A C T C T A G A G T C A G C T C T G A C A G T T A C G A T C G C A G T T C G A