Information for 8-YCATGGCWRCGSA (Motif 9)

A G T C A G T C C G T A A C G T A C T G A C T G A G T C C G T A C T A G A G T C A T C G A T C G T C G A
Reverse Opposite:
A C G T A T G C A T G C A C T G A G T C C G A T A C T G A G T C A G T C C G T A A C G T A C T G C T A G
p-value:1e-11
log p-value:-2.668e+01
Information Content per bp:1.873
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.71%
Number of Background Sequences with motif2.1
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets64.0 +/- 11.5bp
Average Position of motif in Background34.9 +/- 1.0bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Rfx1/MA0509.1/Jaspar

Match Rank:1
Score:0.72
Offset:-4
Orientation:forward strand
Alignment:----YCATGGCWRCGSA
GTTGCCATGGCAAC---
 A C G T A C G T A C G T A C G T A G T C A G T C C G T A A C G T A C T G A C T G A G T C C G T A C T A G A G T C A T C G A T C G T C G A
C T A G A C G T G A C T A C T G A G T C A G T C G C T A G C A T C T A G C T A G G T A C C T G A C T G A A G T C A C G T A C G T A C G T

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:2
Score:0.72
Offset:-3
Orientation:reverse strand
Alignment:---YCATGGCWRCGSA
TTGCCATGGCAACN--
 A C G T A C G T A C G T A G T C A G T C C G T A A C G T A C T G A C T G A G T C C G T A C T A G A G T C A T C G A T C G T C G A
A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A G T C T G A C A C G T A C G T

PB0055.1_Rfx4_1/Jaspar

Match Rank:3
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--YCATGGCWRCGSA
TACCATAGCAACGGT
 A C G T A C G T A G T C A G T C C G T A A C G T A C T G A C T G A G T C C G T A C T A G A G T C A T C G A T C G T C G A
A G C T G T C A T A G C A T G C G T C A A G C T T C G A C T A G G A T C C T G A C T G A A G T C T A C G T C A G C G A T

RFX4/MA0799.1/Jaspar

Match Rank:4
Score:0.69
Offset:-5
Orientation:forward strand
Alignment:-----YCATGGCWRCGSA
CGTTGCCATGGCAACG--
 A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G T A A C G T A C T G A C T G A G T C C G T A C T A G A G T C A T C G A T C G T C G A
A T G C C T A G G C A T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A T C G A G A T C T A C G A C G T A C G T

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:5
Score:0.68
Offset:-3
Orientation:reverse strand
Alignment:---YCATGGCWRCGSA
TTGCCATGGCAACC--
 A C G T A C G T A C G T A G T C A G T C C G T A A C G T A C T G A C T G A G T C C G T A C T A G A G T C A T C G A T C G T C G A
A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A G A T C G T A C A C G T A C G T

RFX2/MA0600.2/Jaspar

Match Rank:6
Score:0.68
Offset:-5
Orientation:reverse strand
Alignment:-----YCATGGCWRCGSA
CGTTGCCATGGCAACG--
 A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G T A A C G T A C T G A C T G A G T C C G T A C T A G A G T C A T C G A T C G T C G A
A T G C C T A G G A C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A C T G A A G T C T A C G A C G T A C G T

RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer

Match Rank:7
Score:0.68
Offset:-4
Orientation:reverse strand
Alignment:----YCATGGCWRCGSA
GTTGCCATGGCAACCG-
 A C G T A C G T A C G T A C G T A G T C A G T C C G T A A C G T A C T G A C T G A G T C C G T A C T A G A G T C A T C G A T C G T C G A
C T A G A G C T G A C T C T A G A G T C A G T C G T C A C G A T T C A G T C A G G A T C C T G A T C G A G A T C T A G C T C A G A C G T

RFX3/MA0798.1/Jaspar

Match Rank:8
Score:0.68
Offset:-5
Orientation:reverse strand
Alignment:-----YCATGGCWRCGSA
CGTTGCCATGGCAACN--
 A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G T A A C G T A C T G A C T G A G T C C G T A C T A G A G T C A T C G A T C G T C G A
A T G C C T A G A G C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A C T G A G A T C T A C G A C G T A C G T

Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer

Match Rank:9
Score:0.67
Offset:-5
Orientation:reverse strand
Alignment:-----YCATGGCWRCGSA
KGTTGCCATGGCAAC---
 A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G T A A C G T A C T G A C T G A G T C C G T A C T A G A G T C A T C G A T C G T C G A
A C T G C T A G A G C T G A C T C A T G A G T C A G T C G T C A C A G T C T A G T C A G G T A C C T G A T C G A G A T C A C G T A C G T A C G T

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:10
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--YCATGGCWRCGSA
CCGCATAGCAACGGA
 A C G T A C G T A G T C A G T C C G T A A C G T A C T G A C T G A G T C C G T A C T A G A G T C A T C G A T C G T C G A
A G T C A G T C T A C G A T G C G C T A G A C T T C G A C T A G G A T C C T G A T C G A A G T C T A C G T C A G C T G A