Information for 5-CAGGMCAGCGAGT (Motif 7)

A T G C C G T A A C T G C T A G G T A C A G T C G T C A A T C G T G A C A C T G C G T A C T A G A C G T
Reverse Opposite:
C G T A A G T C C G A T A G T C A C T G A T G C A C G T A C T G A C T G A G T C A G T C C G A T A T C G
p-value:1e-13
log p-value:-3.176e+01
Information Content per bp:1.815
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.07%
Number of Background Sequences with motif7.9
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets35.7 +/- 22.6bp
Average Position of motif in Background49.4 +/- 15.5bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer

Match Rank:1
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-CAGGMCAGCGAGT------
NGAGGTCANNGAGTTCANNN
 A C G T A T G C C G T A A C T G C T A G G T A C A G T C G T C A A T C G T G A C A C T G C G T A C T A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C T G A T C A G C T G A C T A G C A T G A C G T A T G C C G T A A T G C G C A T T C A G C T G A A C T G A C G T C A G T A G T C C G T A C A G T C T A G C A T G

PB0140.1_Irf6_2/Jaspar

Match Rank:2
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:CAGGMCAGCGAGT---
-NNNACCGAGAGTNNN
 A T G C C G T A A C T G C T A G G T A C A G T C G T C A A T C G T G A C A C T G C G T A C T A G A C G T A C G T A C G T A C G T
A C G T A T C G G A C T C A T G G T C A A G T C G A T C C T A G T C G A T A C G G T C A C A T G C G A T T C A G T A C G A C G T

ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:3
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:CAGGMCAGCGAGT---
NAGAACAGNCTGTNCT
 A T G C C G T A A C T G C T A G G T A C A G T C G T C A A T C G T G A C A C T G C G T A C T A G A C G T A C G T A C G T A C G T
T C G A C T G A C T A G T C G A C G T A A T G C C G T A A T C G G C A T T A G C G C A T A T C G G C A T A G C T G A T C G A C T

GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer

Match Rank:4
Score:0.59
Offset:0
Orientation:forward strand
Alignment:CAGGMCAGCGAGT--
VAGRACAKWCTGTYC
 A T G C C G T A A C T G C T A G G T A C A G T C G T C A A T C G T G A C A C T G C G T A C T A G A C G T A C G T A C G T
T G A C C T G A C T A G C T G A C G T A A G T C C T G A A C G T G C A T T A G C G C A T A T C G G A C T G A C T G A T C

GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer

Match Rank:5
Score:0.58
Offset:0
Orientation:forward strand
Alignment:CAGGMCAGCGAGT---
NAGNACANNNTGTNCT
 A T G C C G T A A C T G C T A G G T A C A G T C G T C A A T C G T G A C A C T G C G T A C T A G A C G T A C G T A C G T A C G T
T A C G C T G A C T A G T C G A C G T A A G T C C T G A A T C G G C A T T A G C G A C T A C T G A C G T A G C T A G T C G A C T

PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer

Match Rank:6
Score:0.58
Offset:0
Orientation:forward strand
Alignment:CAGGMCAGCGAGT--
VAGRACAKNCTGTBC
 A T G C C G T A A C T G C T A G G T A C A G T C G T C A A T C G T G A C A C T G C G T A C T A G A C G T A C G T A C G T
T G A C C T G A C T A G T C G A C T G A A T G C C G T A A C T G G C A T G T A C G C A T A T C G G C A T A G C T G A T C

RXRA::VDR/MA0074.1/Jaspar

Match Rank:7
Score:0.56
Offset:1
Orientation:forward strand
Alignment:CAGGMCAGCGAGT---
-GGGTCAACGAGTTCA
 A T G C C G T A A C T G C T A G G T A C A G T C G T C A A T C G T G A C A C T G C G T A C T A G A C G T A C G T A C G T A C G T
A C G T C T A G A C T G A C T G A C G T A G T C C T G A G C A T A G T C C T A G C T A G A C T G A C G T C G A T A G T C T C G A

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:8
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-CAGGMCAGCGAGT
TRAGGTCA------
 A C G T A T G C C G T A A C T G C T A G G T A C A G T C G T C A A T C G T G A C A C T G C G T A C T A G A C G T
G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T

PB0138.1_Irf4_2/Jaspar

Match Rank:9
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:CAGGMCAGCGAGT---
-GNNACCGAGAATNNN
 A T G C C G T A A C T G C T A G G T A C A G T C G T C A A T C G T G A C A C T G C G T A C T A G A C G T A C G T A C G T A C G T
A C G T A T C G G T A C C T G A G C T A A G T C A G T C C A T G T C G A C A T G G C T A C T G A C G A T T C G A A T G C A G C T

Vdr/MA0693.1/Jaspar

Match Rank:10
Score:0.54
Offset:0
Orientation:forward strand
Alignment:CAGGMCAGCGAGT---
GAGTTCATTGAGTTCA
 A T G C C G T A A C T G C T A G G T A C A G T C G T C A A T C G T G A C A C T G C G T A C T A G A C G T A C G T A C G T A C G T
T C A G T C G A C A T G A C G T A C G T A G T C C T G A G A C T G A C T T C A G T C G A C T A G A C G T A C G T A G T C C T G A