Information for 3-RGACTGCVMCTCCCAG (Motif 6)

C T A G T C A G G T C A T A G C A G C T T C A G A G T C T C G A G T C A G T A C G C A T A T G C A T G C A G T C C T G A C T A G
Reverse Opposite:
G A T C A G C T C T A G A T C G A T C G C G T A C A T G C A G T A C G T T A C G A G T C C T G A A C T G A C G T A G T C A G T C
p-value:1e-14
log p-value:-3.445e+01
Information Content per bp:1.625
Number of Target Sequences with motif31.0
Percentage of Target Sequences with motif3.67%
Number of Background Sequences with motif272.5
Percentage of Background Sequences with motif0.57%
Average Position of motif in Targets43.9 +/- 21.5bp
Average Position of motif in Background46.7 +/- 27.6bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.16
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer

Match Rank:1
Score:0.80
Offset:1
Orientation:forward strand
Alignment:RGACTGCVMCTCCCAG-----
-RACTACAACTCCCAGVAKGC
 C T A G T C A G G T C A T A G C A G C T T C A G A G T C T C G A G T C A G T A C G C A T A T G C A T G C A G T C C T G A C T A G A C G T A C G T A C G T A C G T A C G T
A C G T T C A G C G T A A G T C A G C T C G T A A G T C C T G A C G T A A G T C G C A T A G T C A G T C A G T C C T G A A C T G T G C A T C G A C A T G A T C G G A T C

GFY-Staf(?,Zf)/Promoter/Homer

Match Rank:2
Score:0.77
Offset:1
Orientation:forward strand
Alignment:RGACTGCVMCTCCCAG-----
-AACTACAATTCCCAGAATGC
 C T A G T C A G G T C A T A G C A G C T T C A G A G T C T C G A G T C A G T A C G C A T A T G C A T G C A G T C C T G A C T A G A C G T A C G T A C G T A C G T A C G T
A C G T T C G A C G T A A G T C A G C T C G T A A G T C T C G A G C T A G A C T C G A T A G T C A G T C A G T C C T G A T C A G T G C A T C G A C A G T A T C G A G T C

GFY(?)/Promoter/Homer

Match Rank:3
Score:0.75
Offset:2
Orientation:forward strand
Alignment:RGACTGCVMCTCCCAG
--ACTACAATTCCC--
 C T A G T C A G G T C A T A G C A G C T T C A G A G T C T C G A G T C A G T A C G C A T A T G C A T G C A G T C C T G A C T A G
A C G T A C G T T G C A T A G C G A C T T G C A T G A C T G C A C G T A A G C T A G C T A G T C A G T C G T A C A C G T A C G T

Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer

Match Rank:4
Score:0.52
Offset:5
Orientation:forward strand
Alignment:RGACTGCVMCTCCCAG
-----GCCACACCCA-
 C T A G T C A G G T C A T A G C A G C T T C A G A G T C T C G A G T C A G T A C G C A T A T G C A T G C A G T C C T G A C T A G
A C G T A C G T A C G T A C G T A C G T C T A G G T A C A G T C T G C A A G T C C T G A A G T C A G T C A G T C G C T A A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:5
Score:0.51
Offset:9
Orientation:reverse strand
Alignment:RGACTGCVMCTCCCAG---
---------ATGCCAGACN
 C T A G T C A G G T C A T A G C A G C T T C A G A G T C T C G A G T C A G T A C G C A T A T G C A T G C A G T C C T G A C T A G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C

PB0203.1_Zfp691_2/Jaspar

Match Rank:6
Score:0.51
Offset:-4
Orientation:forward strand
Alignment:----RGACTGCVMCTCCCAG
TACGAGACTCCTCTAAC---
 A C G T A C G T A C G T A C G T C T A G T C A G G T C A T A G C A G C T T C A G A G T C T C G A G T C A G T A C G C A T A T G C A T G C A G T C C T G A C T A G
C A G T C T G A A T G C A C T G C G T A C A T G C T G A A T G C A C G T A G T C T G A C A G C T G A T C C G A T T G C A G T C A T A G C A C G T A C G T A C G T

PB0091.1_Zbtb3_1/Jaspar

Match Rank:7
Score:0.51
Offset:-4
Orientation:forward strand
Alignment:----RGACTGCVMCTCCCAG
AATCGCACTGCATTCCG---
 A C G T A C G T A C G T A C G T C T A G T C A G G T C A T A G C A G C T T C A G A G T C T C G A G T C A G T A C G C A T A T G C A T G C A G T C C T G A C T A G
C T G A C T G A A C G T A T G C A T C G G T A C C T G A A T G C C G A T A C T G A T G C G T C A A G C T A C G T A T G C A T G C A C T G A C G T A C G T A C G T

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:8
Score:0.51
Offset:9
Orientation:reverse strand
Alignment:RGACTGCVMCTCCCAG---
---------TGCCCAGNHW
 C T A G T C A G G T C A T A G C A G C T T C A G A G T C T C G A G T C A G T A C G C A T A T G C A T G C A G T C C T G A C T A G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G A T C A T G A G T C G A T C G T A C G C T A C T A G C A T G G A T C C G T A

ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer

Match Rank:9
Score:0.50
Offset:7
Orientation:forward strand
Alignment:RGACTGCVMCTCCCAG------
-------ATTTCCCAGVAKSCY
 C T A G T C A G G T C A T A G C A G C T T C A G A G T C T C G A G T C A G T A C G C A T A T G C A T G C A G T C C T G A C T A G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T G C A G C A T A G C T G C A T A G T C A G T C A G T C C T G A A C T G T C G A T C G A C A G T A T C G A G T C G A T C

Klf4/MA0039.2/Jaspar

Match Rank:10
Score:0.50
Offset:5
Orientation:reverse strand
Alignment:RGACTGCVMCTCCCAG
-----GCCCCACCCA-
 C T A G T C A G G T C A T A G C A G C T T C A G A G T C T C G A G T C A G T A C G C A T A T G C A T G C A G T C C T G A C T A G
A C G T A C G T A C G T A C G T A C G T T C A G T G A C G A T C T G A C G T A C C T G A T A G C A G T C A G T C G C T A A C G T