Information for 17-AATAGCAAGGCAA (Motif 21)

C G T A C G T A A C G T C G T A A C T G A G T C C G T A C G T A A C T G A C T G A G T C C G T A C G T A
Reverse Opposite:
A C G T A C G T A C T G A G T C A G T C A C G T A C G T A C T G A G T C A C G T C G T A A C G T A C G T
p-value:1e-8
log p-value:-1.934e+01
Information Content per bp:1.530
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.47%
Number of Background Sequences with motif0.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets68.0 +/- 28.8bp
Average Position of motif in Background45.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.61
Offset:6
Orientation:forward strand
Alignment:AATAGCAAGGCAA----
------AAGGCAAGTGT
 C G T A C G T A A C G T C G T A A C T G A G T C C G T A C G T A A C T G A C T G A G T C C G T A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:2
Score:0.60
Offset:5
Orientation:forward strand
Alignment:AATAGCAAGGCAA--
-----CAAGGHCANV
 C G T A C G T A A C G T C G T A A C T G A G T C C G T A C G T A A C T G A C T G A G T C C G T A C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T G A C C G T A C T G A A C T G A C T G G A C T G A T C T G C A G T A C T A C G

PB0119.1_Foxa2_2/Jaspar

Match Rank:3
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---AATAGCAAGGCAA
AAAAATAACAAACGG-
 A C G T A C G T A C G T C G T A C G T A A C G T C G T A A C T G A G T C C G T A C G T A A C T G A C T G A G T C C G T A C G T A
T C G A T C G A C G T A C G T A G T C A A C G T C T G A C G T A G A T C G T C A G C T A C T G A T A G C T A C G A T C G A C G T

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:4
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---AATAGCAAGGCAA
CCGCATAGCAACGGA-
 A C G T A C G T A C G T C G T A C G T A A C G T C G T A A C T G A G T C C G T A C G T A A C T G A C T G A G T C C G T A C G T A
A G T C A G T C T A C G A T G C G C T A G A C T T C G A C T A G G A T C C T G A T C G A A G T C T A C G T C A G C T G A A C G T

PB0146.1_Mafk_2/Jaspar

Match Rank:5
Score:0.54
Offset:-5
Orientation:forward strand
Alignment:-----AATAGCAAGGCAA
GAAAAAATTGCAAGG---
 A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C G T C G T A A C T G A G T C C G T A C G T A A C T G A C T G A G T C C G T A C G T A
T C A G G T C A T C G A C T G A C T G A G C T A G C T A C A G T A G C T C A T G A G T C T G C A G T C A A T C G T C A G A C G T A C G T A C G T

Nr5a2/MA0505.1/Jaspar

Match Rank:6
Score:0.54
Offset:0
Orientation:forward strand
Alignment:AATAGCAAGGCAA--
AAGTTCAAGGTCAGC
 C G T A C G T A A C G T C G T A A C T G A G T C C G T A C G T A A C T G A C T G A G T C C G T A C G T A A C G T A C G T
T C G A C T G A C T A G A G C T G A C T T A G C G T C A C T G A C T A G A C T G G A C T A G T C C G T A A C T G A T G C

PB0055.1_Rfx4_1/Jaspar

Match Rank:7
Score:0.53
Offset:-3
Orientation:forward strand
Alignment:---AATAGCAAGGCAA
TACCATAGCAACGGT-
 A C G T A C G T A C G T C G T A C G T A A C G T C G T A A C T G A G T C C G T A C G T A A C T G A C T G A G T C C G T A C G T A
A G C T G T C A T A G C A T G C G T C A A G C T T C G A C T A G G A T C C T G A C T G A A G T C T A C G T C A G C G A T A C G T

Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:8
Score:0.53
Offset:-5
Orientation:forward strand
Alignment:-----AATAGCAAGGCAA
CCAAAAATAG--------
 A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C G T C G T A A C T G A G T C C G T A C G T A A C T G A C T G A G T C C G T A C G T A
G T A C G A C T C G T A C T G A T C G A C G T A G C T A C A G T C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

MEF2C/MA0497.1/Jaspar

Match Rank:9
Score:0.52
Offset:-8
Orientation:forward strand
Alignment:--------AATAGCAAGGCAA
ATGCTAAAAATAGAA------
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C G T C G T A A C T G A G T C C G T A C G T A A C T G A C T G A G T C C G T A C G T A
C T G A C G A T C A T G G T A C A G C T G C T A C T G A C T G A C G T A C G T A G A C T C T G A T C A G G T C A G C T A A C G T A C G T A C G T A C G T A C G T A C G T

Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer

Match Rank:10
Score:0.52
Offset:-6
Orientation:forward strand
Alignment:------AATAGCAAGGCAA
DCYAAAAATAGM-------
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C G T C G T A A C T G A G T C C G T A C G T A A C T G A C T G A G T C C G T A C G T A
C A T G G T A C G A C T G C T A C G T A C G T A C G T A G C T A G A C T C T G A T C A G G T A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T