Information for 2-GAAAGGAGACAGT (Motif 6)

A C T G C G T A C G T A C G T A A C T G A C T G C G T A A T C G C G T A A G T C C G T A A T C G A C G T
Reverse Opposite:
C G T A A T G C A C G T A C T G A C G T A T G C A C G T A G T C A G T C A C G T A C G T A C G T A G T C
p-value:1e-10
log p-value:-2.378e+01
Information Content per bp:1.940
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif4.17%
Number of Background Sequences with motif3.3
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets51.5 +/- 19.4bp
Average Position of motif in Background35.9 +/- 15.6bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0033.1_Irf3_1/Jaspar

Match Rank:1
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--GAAAGGAGACAGT
GAGAACCGAAACTG-
 A C G T A C G T A C T G C G T A C G T A C G T A A C T G A C T G C G T A A T C G C G T A A G T C C G T A A T C G A C G T
A C T G C T G A C T A G C G T A G C T A G T A C T A G C C T A G T C G A G C T A G C T A A T G C G A C T C T A G A C G T

Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer

Match Rank:2
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---GAAAGGAGACAGT
ANGNAAAGGTCA----
 A C G T A C G T A C G T A C T G C G T A C G T A C G T A A C T G A C T G C G T A A T C G C G T A A G T C C G T A A T C G A C G T
C T G A A C T G C A T G C A G T C G T A C G T A C G T A A C T G A C T G A C G T A G T C C G T A A C G T A C G T A C G T A C G T

PB0137.1_Irf3_2/Jaspar

Match Rank:3
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---GAAAGGAGACAGT
GGAGAAAGGTGCGA--
 A C G T A C G T A C G T A C T G C G T A C G T A C G T A A C T G A C T G C G T A A T C G C G T A A G T C C G T A A T C G A C G T
C T A G C A T G C G T A C T A G C G T A G C T A C G T A A T C G T A C G C G A T A T C G A G T C C T A G C T G A A C G T A C G T

PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:4
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--GAAAGGAGACAGT
CGGAAGTGAAAC---
 A C G T A C G T A C T G C G T A C G T A C G T A A C T G A C T G C G T A A T C G C G T A A G T C C G T A A T C G A C G T
T G A C C T A G T C A G G T C A C G T A T C A G C G A T T C A G T C G A T G C A C T G A T A G C A C G T A C G T A C G T

NR4A2/MA0160.1/Jaspar

Match Rank:5
Score:0.58
Offset:2
Orientation:forward strand
Alignment:GAAAGGAGACAGT
--AAGGTCAC---
 A C T G C G T A C G T A C G T A A C T G A C T G C G T A A T C G C G T A A G T C C G T A A T C G A C G T
A C G T A C G T C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C A C G T A C G T A C G T

ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer

Match Rank:6
Score:0.58
Offset:3
Orientation:forward strand
Alignment:GAAAGGAGACAGT--
---AGGAAACAGCTG
 A C T G C G T A C G T A C G T A A C T G A C T G C G T A A T C G C G T A A G T C C G T A A T C G A C G T A C G T A C G T
A C G T A C G T A C G T T C G A A C T G A C T G C G T A C G T A T C G A A G T C C T G A A T C G G T A C G C A T C A T G

FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer

Match Rank:7
Score:0.58
Offset:1
Orientation:forward strand
Alignment:GAAAGGAGACAGT
-AAAGTAAACA--
 A C T G C G T A C G T A C G T A A C T G A C T G C G T A A T C G C G T A A G T C C G T A A T C G A C G T
A C G T G C T A T C G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C C G T A A C G T A C G T

FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:8
Score:0.58
Offset:1
Orientation:forward strand
Alignment:GAAAGGAGACAGT
-AAAGTAAACA--
 A C T G C G T A C G T A C G T A A C T G A C T G C G T A A T C G C G T A A G T C C G T A A T C G A C G T
A C G T G C T A T C G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C C G T A A C G T A C G T

PB0053.1_Rara_1/Jaspar

Match Rank:9
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---GAAAGGAGACAGT
TCTCAAAGGTCACCTG
 A C G T A C G T A C G T A C T G C G T A C G T A C G T A A C T G A C T G C G T A A T C G C G T A A G T C C G T A A T C G A C G T
C A G T G T A C A G C T G T A C G C T A C T G A T C G A A C T G A C T G A C G T A G T C C T G A G A T C T A G C G A C T C A T G

PB0203.1_Zfp691_2/Jaspar

Match Rank:10
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--GAAAGGAGACAGT--
NTNNNAGGAGTCTCNTN
 A C G T A C G T A C T G C G T A C G T A C G T A A C T G A C T G C G T A A T C G C G T A A G T C C G T A A T C G A C G T A C G T A C G T
A T C G C A G T A C G T G C T A C T A G C T G A A C T G A C T G C G T A A T C G A G C T G T A C G C A T T G A C T A C G G A C T G T C A