Information for 5-GAGTGTTGCCACA (Motif 9)

C T A G C G T A A T C G A C G T A T C G A C G T A C G T C T A G A G T C A G T C G T C A A G T C C G T A
Reverse Opposite:
C G A T C T A G A C G T A C T G A C T G A G T C G T C A C G T A A T G C C G T A A T G C A C G T A G T C
p-value:1e-10
log p-value:-2.308e+01
Information Content per bp:1.837
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif2.90%
Number of Background Sequences with motif0.7
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets42.3 +/- 18.9bp
Average Position of motif in Background71.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.17
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer

Match Rank:1
Score:0.62
Offset:5
Orientation:reverse strand
Alignment:GAGTGTTGCCACA--
-----TTGCAACATN
 C T A G C G T A A T C G A C G T A T C G A C G T A C G T C T A G A G T C A G T C G T C A A G T C C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C A G T A C G T C T A G A G T C G T C A C G T A G A T C G C T A A G C T G A T C

Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer

Match Rank:2
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:GAGTGTTGCCACA-----
-NSTGTTTRCWCAGBNNN
 C T A G C G T A A T C G A C G T A T C G A C G T A C G T C T A G A G T C A G T C G T C A A G T C C G T A A C G T A C G T A C G T A C G T A C G T
A C G T G A C T A T G C A C G T C T A G C G A T C A G T C A G T T C G A G A T C G C T A A G T C C G T A T C A G A T G C T A G C G A C T T A C G

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:3
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--GAGTGTTGCCACA
TTRAGTGSYK-----
 A C G T A C G T C T A G C G T A A T C G A C G T A T C G A C G T A C G T C T A G A G T C A G T C G T C A A G T C C G T A
A G C T G A C T C T A G C G T A C A T G C G A T C T A G A T C G G A C T C A G T A C G T A C G T A C G T A C G T A C G T

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:4
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:GAGTGTTGCCACA-
--CTGTTGCTAGGS
 C T A G C G T A A T C G A C G T A T C G A C G T A C G T C T A G A G T C A G T C G T C A A G T C C G T A A C G T
A C G T A C G T A G T C C G A T A C T G A C G T G A C T C T A G A G T C A G C T C T G A C A T G C T A G T A C G

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:5
Score:0.55
Offset:4
Orientation:reverse strand
Alignment:GAGTGTTGCCACA
----CTTGGCAA-
 C T A G C G T A A T C G A C G T A T C G A C G T A C G T C T A G A G T C A G T C G T C A A G T C C G T A
A C G T A C G T A C G T A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T

EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer

Match Rank:6
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--GAGTGTTGCCACA
NTGGGTGTGGCC---
 A C G T A C G T C T A G C G T A A T C G A C G T A T C G A C G T A C G T C T A G A G T C A G T C G T C A A G T C C G T A
T G A C C G A T A C T G A C T G A C T G G A C T A C T G A C G T A C T G A C T G G A T C G A T C A C G T A C G T A C G T

Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-GAGTGTTGCCACA
TGGGTGTGGC----
 A C G T C T A G C G T A A T C G A C G T A T C G A C G T A C G T C T A G A G T C A G T C G T C A A G T C C G T A
C G A T A C T G A C T G A C T G A G C T A C T G A C G T C T A G C A T G G A T C A C G T A C G T A C G T A C G T

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:8
Score:0.54
Offset:4
Orientation:forward strand
Alignment:GAGTGTTGCCACA---
----NWAACCACADNN
 C T A G C G T A A T C G A C G T A T C G A C G T A C G T C T A G A G T C A G T C G T C A A G T C C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T G A C G C T A T C G A T G C A A G T C A G T C C G T A A G T C C G T A C T G A G C T A G T A C

Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer

Match Rank:9
Score:0.54
Offset:0
Orientation:forward strand
Alignment:GAGTGTTGCCACA--
BSNTGTTTACWYWGN
 C T A G C G T A A T C G A C G T A T C G A C G T A C G T C T A G A G T C A G T C G T C A A G T C C G T A A C G T A C G T
A G T C T A G C G A C T A C G T C T A G A C G T A C G T A C G T C T G A A G T C G C T A G A C T C G T A C T A G A C T G

Sox5/MA0087.1/Jaspar

Match Rank:10
Score:0.54
Offset:1
Orientation:forward strand
Alignment:GAGTGTTGCCACA
-ATTGTTA-----
 C T A G C G T A A T C G A C G T A T C G A C G T A C G T C T A G A G T C A G T C G T C A A G T C C G T A
A C G T C G T A A C G T A C G T C T A G A G C T G A C T C G A T A C G T A C G T A C G T A C G T A C G T