Information for 5-CAGGHAGGCAGRGAGV (Motif 15)

T G A C G C T A C T A G C T A G G A T C G C T A A C T G C T A G T A G C C G T A C T A G T C G A T A C G C T G A C T A G T A G C
Reverse Opposite:
A T C G G A T C G A C T A T G C A G C T G A T C G C A T A T C G A G T C G T A C C G A T C T A G A G T C G A T C C G A T A C T G
p-value:1e-9
log p-value:-2.174e+01
Information Content per bp:1.597
Number of Target Sequences with motif18.0
Percentage of Target Sequences with motif8.70%
Number of Background Sequences with motif41.2
Percentage of Background Sequences with motif1.30%
Average Position of motif in Targets41.7 +/- 24.6bp
Average Position of motif in Background48.1 +/- 26.9bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.11
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

EWSR1-FLI1/MA0149.1/Jaspar

Match Rank:1
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--CAGGHAGGCAGRGAGV
GGAAGGAAGGAAGGAAGG
 A C G T A C G T T G A C G C T A C T A G C T A G G A T C G C T A A C T G C T A G T A G C C G T A C T A G T C G A T A C G C T G A C T A G T A G C
A C T G C T A G C T G A C T G A C T A G C T A G C T G A C T G A A C T G A T C G T G C A C G T A A C T G A T C G G T C A C T G A C T A G T A C G

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:2
Score:0.54
Offset:4
Orientation:forward strand
Alignment:CAGGHAGGCAGRGAGV
----AAGGCAAGTGT-
 T G A C G C T A C T A G C T A G G A T C G C T A A C T G C T A G T A G C C G T A C T A G T C G A T A C G C T G A C T A G T A G C
A C G T A C G T A C G T A C G T T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T A C G T

PB0029.1_Hic1_1/Jaspar

Match Rank:3
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--CAGGHAGGCAGRGAGV
NGTAGGTTGGCATNNN--
 A C G T A C G T T G A C G C T A C T A G C T A G G A T C G C T A A C T G C T A G T A G C C G T A C T A G T C G A T A C G C T G A C T A G T A G C
C T A G C T A G A G C T C G T A T C A G T C A G A C G T C A G T A C T G A T C G A G T C C G T A G A C T T G C A T C A G G C A T A C G T A C G T

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:4
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-CAGGHAGGCAGRGAGV
SCAGYCADGCATGAC--
 A C G T T G A C G C T A C T A G C T A G G A T C G C T A A C T G C T A G T A G C C G T A C T A G T C G A T A C G C T G A C T A G T A G C
A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.52
Offset:7
Orientation:reverse strand
Alignment:CAGGHAGGCAGRGAGV-
-------CCAGACRSVB
 T G A C G C T A C T A G C T A G G A T C G C T A A C T G C T A G T A G C C G T A C T A G T C G A T A C G C T G A C T A G T A G C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

Hic1/MA0739.1/Jaspar

Match Rank:6
Score:0.52
Offset:2
Orientation:reverse strand
Alignment:CAGGHAGGCAGRGAGV
--GGTTGGCAT-----
 T G A C G C T A C T A G C T A G G A T C G C T A A C T G C T A G T A G C C G T A C T A G T C G A T A C G C T G A C T A G T A G C
A C G T A C G T T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T A C G T A C G T A C G T A C G T A C G T

PH0148.1_Pou3f3/Jaspar

Match Rank:7
Score:0.51
Offset:0
Orientation:forward strand
Alignment:CAGGHAGGCAGRGAGV-
AAAATATGCATAATAAA
 T G A C G C T A C T A G C T A G G A T C G C T A A C T G C T A G T A G C C G T A C T A G T C G A T A C G C T G A C T A G T A G C A C G T
G C T A G C T A C T A G C G T A G A C T G C T A G A C T C A T G G T A C C T G A C G A T C G T A G C T A C A G T C T G A C G T A C G T A

PB0166.1_Sox12_2/Jaspar

Match Rank:8
Score:0.51
Offset:1
Orientation:forward strand
Alignment:CAGGHAGGCAGRGAGV-
-AAACAGACAAAGGAAT
 T G A C G C T A C T A G C T A G G A T C G C T A A C T G C T A G T A G C C G T A C T A G T C G A T A C G C T G A C T A G T A G C A C G T
A C G T T G C A T G C A C G T A A G C T C T G A A T C G C G T A A G T C G C T A T C G A G C T A T A C G T C A G T G C A C G T A G A C T

FOXP2/MA0593.1/Jaspar

Match Rank:9
Score:0.50
Offset:1
Orientation:forward strand
Alignment:CAGGHAGGCAGRGAGV
-AAGTAAACAAA----
 T G A C G C T A C T A G C T A G G A T C G C T A A C T G C T A G T A G C C G T A C T A G T C G A T A C G C T G A C T A G T A G C
A C G T C T G A C G T A C T A G C G A T C G T A C G T A C G T A A G T C C G T A T C G A C T G A A C G T A C G T A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.50
Offset:7
Orientation:reverse strand
Alignment:CAGGHAGGCAGRGAGV
-------CCAGACAG-
 T G A C G C T A C T A G C T A G G A T C G C T A A C T G C T A G T A G C C G T A C T A G T C G A T A C G C T G A C T A G T A G C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T