Information for 3-CCTAGCTGGSAGV (Motif 5)

A T G C G T A C A G C T C G T A T A C G A T G C C G A T A C T G A C T G T A G C C G T A A C T G T C A G
Reverse Opposite:
A G T C A G T C A C G T A T C G A G T C A G T C C G T A A T C G A G T C C G A T T C G A C A T G T A C G
p-value:1e-14
log p-value:-3.445e+01
Information Content per bp:1.745
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif2.04%
Number of Background Sequences with motif43.7
Percentage of Background Sequences with motif0.09%
Average Position of motif in Targets46.5 +/- 23.4bp
Average Position of motif in Background50.9 +/- 30.2bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.62
Offset:0
Orientation:forward strand
Alignment:CCTAGCTGGSAGV
CACAGCAGGGGG-
 A T G C G T A C A G C T C G T A T A C G A T G C C G A T A C T G A C T G T A G C C G T A A C T G T C A G
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:2
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-CCTAGCTGGSAGV-
DCHCAGCAGGRGGCC
 A C G T A T G C G T A C A G C T C G T A T A C G A T G C C G A T A C T G A C T G T A G C C G T A A C T G T C A G A C G T
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

THAP1/MA0597.1/Jaspar

Match Rank:3
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:CCTAGCTGGSAGV
---TNNGGGCAG-
 A T G C G T A C A G C T C G T A T A C G A T G C C G A T A C T G A C T G T A G C C G T A A C T G T C A G
A C G T A C G T A C G T C A G T T C A G G T A C C A T G C A T G C T A G G T A C C T G A T C A G A C G T

Hic1/MA0739.1/Jaspar

Match Rank:4
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:CCTAGCTGGSAGV
---GGTTGGCAT-
 A T G C G T A C A G C T C G T A T A C G A T G C C G A T A C T G A C T G T A G C C G T A A C T G T C A G
A C G T A C G T A C G T T C A G T A C G A G C T C A G T C A T G A T C G A G T C T C G A A G C T A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:5
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--CCTAGCTGGSAGV
TCNCCTGCTGNGNNN
 A C G T A C G T A T G C G T A C A G C T C G T A T A C G A T G C C G A T A C T G A C T G T A G C C G T A A C T G T C A G
G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:6
Score:0.59
Offset:4
Orientation:reverse strand
Alignment:CCTAGCTGGSAGV
----CTTGGCAA-
 A T G C G T A C A G C T C G T A T A C G A T G C C G A T A C T G A C T G T A G C C G T A A C T G T C A G
A C G T A C G T A C G T A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T

Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer

Match Rank:7
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-CCTAGCTGGSAGV
NNCTTCCNGGAAGN
 A C G T A T G C G T A C A G C T C G T A T A C G A T G C C G A T A C T G A C T G T A G C C G T A A C T G T C A G
A T G C T C G A A G T C A G C T A C G T G T A C A G T C G C T A C T A G C A T G G T C A C T G A T C A G A G T C

PB0205.1_Zic1_2/Jaspar

Match Rank:8
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--CCTAGCTGGSAGV
TNTCCTGCTGTGNNG
 A C G T A C G T A T G C G T A C A G C T C G T A T A C G A T G C C G A T A C T G A C T G T A G C C G T A A C T G T C A G
G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G

GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer

Match Rank:9
Score:0.57
Offset:3
Orientation:forward strand
Alignment:CCTAGCTGGSAGV
---NACCGGAAGT
 A T G C G T A C A G C T C G T A T A C G A T G C C G A T A C T G A C T G T A G C C G T A A C T G T C A G
A C G T A C G T A C G T T C G A T C G A T A G C G T A C T C A G T A C G C G T A C G T A T C A G A G C T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:10
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:CCTAGCTGGSAGV---
---AGGTGNCAGACAG
 A T G C G T A C A G C T C G T A T A C G A T G C C G A T A C T G A C T G T A G C C G T A A C T G T C A G A C G T A C G T A C G T
A C G T A C G T A C G T C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G