Information for 5-AGCTGAGAGWCAGGCA (Motif 6)

G C T A A C T G T A G C C G A T A T C G C G T A T A C G C G T A C T A G G C T A A G T C C G T A C A T G A T C G A T G C C G T A
Reverse Opposite:
C G A T T A C G A T G C G T A C A C G T A C T G C G A T A G T C G C A T A T G C A C G T T A G C C G T A A T C G G T A C C A G T
p-value:1e-14
log p-value:-3.357e+01
Information Content per bp:1.718
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.47%
Number of Background Sequences with motif15.5
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets55.0 +/- 24.1bp
Average Position of motif in Background40.9 +/- 18.7bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:1
Score:0.74
Offset:3
Orientation:reverse strand
Alignment:AGCTGAGAGWCAGGCA
---TGAGTGACAGSC-
 G C T A A C T G T A G C C G A T A T C G C G T A T A C G C G T A C T A G G C T A A G T C C G T A C A T G A T C G A T G C C G T A
A C G T A C G T A C G T C G A T A T C G T C G A A C T G C G A T A T C G C T G A A G T C C G T A A T C G T A C G G A T C A C G T

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.70
Offset:2
Orientation:reverse strand
Alignment:AGCTGAGAGWCAGGCA
--NTGATTGACAGN--
 G C T A A C T G T A G C C G A T A T C G C G T A T A C G C G T A C T A G G C T A A G T C C G T A C A T G A T C G A T G C C G T A
A C G T A C G T A C G T C G A T A T C G C G T A A C G T C A G T A C T G C T G A A G T C C T G A A T C G A T C G A C G T A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:3
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:AGCTGAGAGWCAGGCA
AGGTGNCAGACAG---
 G C T A A C T G T A G C C G A T A T C G C G T A T A C G C G T A C T A G G C T A A G T C C G T A C A T G A T C G A T G C C G T A
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G A C G T A C G T A C G T

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:4
Score:0.68
Offset:2
Orientation:reverse strand
Alignment:AGCTGAGAGWCAGGCA
--BTGABTGACAGS--
 G C T A A C T G T A G C C G A T A T C G C G T A T A C G C G T A C T A G G C T A A G T C C G T A C A T G A T C G A T G C C G T A
A C G T A C G T A C G T C G A T A C T G C G T A A C G T A C G T A C T G C T G A A G T C C T G A T A C G A T G C A C G T A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.63
Offset:0
Orientation:forward strand
Alignment:AGCTGAGAGWCAGGCA
AGGTGHCAGACA----
 G C T A A C T G T A G C C G A T A T C G C G T A T A C G C G T A C T A G G C T A A G T C C G T A C A T G A T C G A T G C C G T A
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T A C G T A C G T A C G T

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:6
Score:0.57
Offset:0
Orientation:forward strand
Alignment:AGCTGAGAGWCAGGCA
AGGTCAAGGTCA----
 G C T A A C T G T A G C C G A T A T C G C G T A T A C G C G T A C T A G G C T A A G T C C G T A C A T G A T C G A T G C C G T A
C T G A C T A G A C T G G C A T A T G C C G T A C T G A C T A G A C T G A C G T A G T C C T G A A C G T A C G T A C G T A C G T

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:7
Score:0.55
Offset:5
Orientation:reverse strand
Alignment:AGCTGAGAGWCAGGCA
-----VBTGWCAGCB-
 G C T A A C T G T A G C C G A T A T C G C G T A T A C G C G T A C T A G G C T A A G T C C G T A C A T G A T C G A T G C C G T A
A C G T A C G T A C G T A C G T A C G T T C A G A T G C A C G T A C T G C G T A A G T C C G T A A T C G A T G C A G T C A C G T

Nr5a2/MA0505.1/Jaspar

Match Rank:8
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-AGCTGAGAGWCAGGCA
AAGTTCAAGGTCAGC--
 A C G T G C T A A C T G T A G C C G A T A T C G C G T A T A C G C G T A C T A G G C T A A G T C C G T A C A T G A T C G A T G C C G T A
T C G A C T G A C T A G A G C T G A C T T A G C G T C A C T G A C T A G A C T G G A C T A G T C C G T A A C T G A T G C A C G T A C G T

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:9
Score:0.53
Offset:0
Orientation:forward strand
Alignment:AGCTGAGAGWCAGGCA
AGGTCAAGGTCA----
 G C T A A C T G T A G C C G A T A T C G C G T A T A C G C G T A C T A G G C T A A G T C C G T A C A T G A T C G A T G C C G T A
T C G A A C T G C A T G A G C T A G T C C G T A C T G A C T A G A C T G C G A T A T G C C T G A A C G T A C G T A C G T A C G T

Pax2/MA0067.1/Jaspar

Match Rank:10
Score:0.51
Offset:7
Orientation:forward strand
Alignment:AGCTGAGAGWCAGGCA
-------AGTCACGC-
 G C T A A C T G T A G C C G A T A T C G C G T A T A C G C G T A C T A G G C T A A G T C C G T A C A T G A T C G A T G C C G T A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C T A C T A G G C A T A G T C C T G A G A T C C A T G A T C G A C G T