Information for 23-TCCCGCTGCAAAT (Motif 40)

G C A T A G T C G A T C G T A C A T C G G T A C C G A T A C T G G T A C C G T A C G T A G T C A C G A T
Reverse Opposite:
G C T A C A G T G C A T G C A T A C T G G T A C C G T A A C T G T A G C C A T G C T A G T C A G C G T A
p-value:1e-7
log p-value:-1.764e+01
Information Content per bp:1.676
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif2.00%
Number of Background Sequences with motif145.5
Percentage of Background Sequences with motif0.31%
Average Position of motif in Targets48.5 +/- 23.6bp
Average Position of motif in Background49.5 +/- 30.9bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:1
Score:0.66
Offset:1
Orientation:forward strand
Alignment:TCCCGCTGCAAAT
-CCTGCTGAGH--
 G C A T A G T C G A T C G T A C A T C G G T A C C G A T A C T G G T A C C G T A C G T A G T C A C G A T
A C G T A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A A C G T A C G T

PB0207.1_Zic3_2/Jaspar

Match Rank:2
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--TCCCGCTGCAAAT
NNTCCTGCTGTGNNN
 A C G T A C G T G C A T A G T C G A T C G T A C A T C G G T A C C G A T A C T G G T A C C G T A C G T A G T C A C G A T
G C A T A T C G C A G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G G A C T A C T G G A T C G C A T G T A C

PB0206.1_Zic2_2/Jaspar

Match Rank:3
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--TCCCGCTGCAAAT
TCNCCTGCTGNGNNN
 A C G T A C G T G C A T A G T C G A T C G T A C A T C G G T A C C G A T A C T G G T A C C G T A C G T A G T C A C G A T
G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:4
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----TCCCGCTGCAAAT
GGCCYCCTGCTGDGH--
 A C G T A C G T A C G T A C G T G C A T A G T C G A T C G T A C A T C G G T A C C G A T A C T G G T A C C G T A C G T A G T C A C G A T
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C A C G T A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:5
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--TCCCGCTGCAAAT
TNTCCTGCTGTGNNG
 A C G T A C G T G C A T A G T C G A T C G T A C A T C G G T A C C G A T A C T G G T A C C G T A C G T A G T C A C G A T
G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G

PH0158.1_Rhox11_2/Jaspar

Match Rank:6
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-TCCCGCTGCAAAT---
AGGACGCTGTAAAGGGA
 A C G T G C A T A G T C G A T C G T A C A T C G G T A C C G A T A C T G G T A C C G T A C G T A G T C A C G A T A C G T A C G T A C G T
C G T A T C A G C A T G G T C A G A T C C T A G T A G C C A G T C T A G G A C T G C T A C G T A G C T A C T A G T A C G T C A G G C T A

Rhox11/MA0629.1/Jaspar

Match Rank:7
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-TCCCGCTGCAAAT---
AAGACGCTGTAAAGCGA
 A C G T G C A T A G T C G A T C G T A C A T C G G T A C C G A T A C T G G T A C C G T A C G T A G T C A C G A T A C G T A C G T A C G T
C G T A T G C A C A T G T G C A G A T C C T A G T A G C C A G T C T A G G A C T C G T A G C T A G C T A C T A G T A G C T C A G G C T A

PH0157.1_Rhox11_1/Jaspar

Match Rank:8
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-TCCCGCTGCAAAT---
AAGACGCTGTAAAGCGA
 A C G T G C A T A G T C G A T C G T A C A T C G G T A C C G A T A C T G G T A C C G T A C G T A G T C A C G A T A C G T A C G T A C G T
C G T A T G C A C A T G T G C A G A T C C T A G T A G C C A G T C T A G G A C T C G T A G C T A G C T A C T A G T A G C T C A G G C T A

E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer

Match Rank:9
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---TCCCGCTGCAAAT
NYTTCCCGCC------
 A C G T A C G T A C G T G C A T A G T C G A T C G T A C A T C G G T A C C G A T A C T G G T A C C G T A C G T A G T C A C G A T
T A G C A G C T G A C T A G C T A T G C T G A C T A G C C A T G A T G C A T G C A C G T A C G T A C G T A C G T A C G T A C G T

Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer

Match Rank:10
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:TCCCGCTGCAAAT
-CCAGCTGTTN--
 G C A T A G T C G A T C G T A C A T C G G T A C C G A T A C T G G T A C C G T A C G T A G T C A C G A T
A C G T T G A C G T A C C T G A A C T G T G A C G C A T C A T G A C G T A C G T G C T A A C G T A C G T