Information for 14-CMAMACWAACCAG (Motif 27)

A G T C G T A C C G T A G T A C C G T A A G T C G C T A G T C A C G T A A G T C A G T C C G T A A C T G
Reverse Opposite:
A G T C A C G T A C T G A C T G A C G T A C G T C G A T A C T G A C G T A C T G A C G T A C T G A C T G
p-value:1e-9
log p-value:-2.187e+01
Information Content per bp:1.898
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.80%
Number of Background Sequences with motif5.2
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets36.7 +/- 24.4bp
Average Position of motif in Background60.0 +/- 22.3bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0040.1_Hmbox1/Jaspar

Match Rank:1
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:CMAMACWAACCAG-----
-GANGTTAACTAGTTTNN
 A G T C G T A C C G T A G T A C C G T A A G T C G C T A G T C A C G T A A G T C A G T C C G T A A C T G A C G T A C G T A C G T A C G T A C G T
A C G T T A C G G C T A G C A T T C A G G C A T G C A T C G T A G T C A A G T C A G C T G T C A T C A G G C A T G A C T G A C T C G A T A G T C

Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer

Match Rank:2
Score:0.59
Offset:0
Orientation:forward strand
Alignment:CMAMACWAACCAG--
TGACANARRCCAGRC
 A G T C G T A C C G T A G T A C C G T A A G T C G C T A G T C A C G T A A G T C A G T C C G T A A C T G A C G T A C G T
C G A T C T A G C T G A A T G C C T G A T C G A C G T A C T G A T C G A T A G C A G T C C G T A A C T G T C G A A T G C

NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:3
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--CMAMACWAACCAG-
TGCCAAAATAAACANN
 A C G T A C G T A G T C G T A C C G T A G T A C C G T A A G T C G C T A G T C A C G T A A G T C A G T C C G T A A C T G A C G T
C G A T A C T G T A G C G T A C C G T A C T G A C T G A C T G A G A C T G T C A G T C A C T G A A G T C C G T A C T G A G C T A

PB0121.1_Foxj3_2/Jaspar

Match Rank:4
Score:0.57
Offset:-5
Orientation:forward strand
Alignment:-----CMAMACWAACCAG
AACACCAAAACAAAGGA-
 A C G T A C G T A C G T A C G T A C G T A G T C G T A C C G T A G T A C C G T A A G T C G C T A G T C A C G T A A G T C A G T C C G T A A C T G
G T C A C G T A A G T C C T G A G A T C G A T C T G C A G C T A G T C A C G T A A G T C C G T A C G T A G C T A C A T G T A C G C G T A A C G T

PB0123.1_Foxl1_2/Jaspar

Match Rank:5
Score:0.56
Offset:-4
Orientation:forward strand
Alignment:----CMAMACWAACCAG
ATATCAAAACAAAACA-
 A C G T A C G T A C G T A C G T A G T C G T A C C G T A G T A C C G T A A G T C G C T A G T C A C G T A A G T C A G T C C G T A A C T G
G C T A C G A T C G T A C G A T G A T C G C T A G C T A G T C A C G T A A G T C C G T A C G T A G T C A C G T A G T A C G T C A A C G T

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:6
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:CMAMACWAACCAG
--NNACTTACCTN
 A G T C G T A C C G T A G T A C C G T A A G T C G C T A G T C A C G T A A G T C A G T C C G T A A C T G
A C G T A C G T C T G A G A C T G C T A G A T C G C A T G A C T C G T A A G T C G A T C G C A T A C T G

TFCP2/MA0145.3/Jaspar

Match Rank:7
Score:0.55
Offset:6
Orientation:forward strand
Alignment:CMAMACWAACCAG---
------AAACCGGTTT
 A G T C G T A C C G T A G T A C C G T A A G T C G C T A G T C A C G T A A G T C A G T C C G T A A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T C G A C G T A C G T A T A G C G A T C C T A G A T C G G C A T G A C T G A C T

RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer

Match Rank:8
Score:0.54
Offset:5
Orientation:forward strand
Alignment:CMAMACWAACCAG--
-----NAAACCACAG
 A G T C G T A C C G T A G T A C C G T A A G T C G C T A G T C A C G T A A G T C A G T C C G T A A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T A G C G C T A T C G A C T G A A G T C A G T C C T G A A G T C C G T A C T A G

NFYA/MA0060.2/Jaspar

Match Rank:9
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:CMAMACWAACCAG------
-TGGACCAATCAGCACTCT
 A G T C G T A C C G T A G T A C C G T A A G T C G C T A G T C A C G T A A G T C A G T C C G T A A C T G A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A G C T A T C G T C A G C T G A A T G C A G T C C G T A T C G A G A C T T A G C T C G A T C A G T G A C C T G A A T G C A C G T G T A C C G A T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:10
Score:0.53
Offset:6
Orientation:reverse strand
Alignment:CMAMACWAACCAG---
------ATGCCAGACN
 A G T C G T A C C G T A G T A C C G T A A G T C G C T A G T C A C G T A A G T C A G T C C G T A A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C