Information for 10-CAGCGTGGAA (Motif 24)

A G T C C G T A A C T G A T G C C T A G A G C T A C T G A T C G C G T A T G C A
Reverse Opposite:
A C G T A C G T T A G C G T A C C T G A A G T C T A C G A G T C A C G T A C T G
p-value:1e-9
log p-value:-2.265e+01
Information Content per bp:1.845
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif1.87%
Number of Background Sequences with motif83.1
Percentage of Background Sequences with motif0.18%
Average Position of motif in Targets54.3 +/- 26.1bp
Average Position of motif in Background54.4 +/- 31.6bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:1
Score:0.70
Offset:-3
Orientation:reverse strand
Alignment:---CAGCGTGGAA
DCTCAGCAGG---
 A C G T A C G T A C G T A G T C C G T A A C T G A T G C C T A G A G C T A C T G A T C G C G T A T G C A
C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G A C G T A C G T A C G T

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:2
Score:0.68
Offset:1
Orientation:forward strand
Alignment:CAGCGTGGAA
-TGCGTG---
 A G T C C G T A A C T G A T G C C T A G A G C T A C T G A T C G C G T A T G C A
A C G T G A C T A C T G A G T C A C T G A C G T A C T G A C G T A C G T A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:3
Score:0.66
Offset:-5
Orientation:forward strand
Alignment:-----CAGCGTGGAA
CCACACAGCAGGAGA
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C T G A T G C C T A G A G C T A C T G A T C G C G T A T G C A
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

PB0207.1_Zic3_2/Jaspar

Match Rank:4
Score:0.64
Offset:-5
Orientation:forward strand
Alignment:-----CAGCGTGGAA
GAGCACAGCAGGACA
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C T G A T G C C T A G A G C T A C T G A T C G C G T A T G C A
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A

POL010.1_DCE_S_III/Jaspar

Match Rank:5
Score:0.62
Offset:0
Orientation:forward strand
Alignment:CAGCGTGGAA
CAGCC-----
 A G T C C G T A A C T G A T G C C T A G A G C T A C T G A T C G C G T A T G C A
T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T A C G T A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:6
Score:0.62
Offset:-5
Orientation:forward strand
Alignment:-----CAGCGTGGAA
CCACACAGCAGGAGA
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C T G A T G C C T A G A G C T A C T G A T C G C G T A T G C A
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

POL009.1_DCE_S_II/Jaspar

Match Rank:7
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--CAGCGTGGAA
CACAGN------
 A C G T A C G T A G T C C G T A A C T G A T G C C T A G A G C T A C T G A T C G C G T A T G C A
T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T A C G T A C G T A C G T

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:8
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:CAGCGTGGAA
TTGCGTGCVA
 A G T C C G T A A C T G A T G C C T A G A G C T A C T G A T C G C G T A T G C A
A C G T C A G T A C T G A G T C T C A G C G A T C A T G G T A C T A G C C G T A

ZNF354C/MA0130.1/Jaspar

Match Rank:9
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:CAGCGTGGAA
----GTGGAT
 A G T C C G T A A C T G A T G C C T A G A G C T A C T G A T C G C G T A T G C A
A C G T A C G T A C G T A C G T A T C G A C G T A C T G A C T G C G T A A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:10
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---CAGCGTGGAA--
DCHCAGCAGGRGGCC
 A C G T A C G T A C G T A G T C C G T A A C T G A T G C C T A G A G C T A C T G A T C G C G T A T G C A A C G T A C G T
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C