Information for 19-CCCGTCGCAGCGTCTC (Motif 35)

A T G C A G T C A G T C C T A G A G C T G T A C A C T G A G T C C G T A A C T G A G T C A C T G A G C T A G T C C G A T A T G C
Reverse Opposite:
A T C G C G T A A C T G C T G A A G T C A C T G A G T C A C G T A C T G A G T C A C T G C T G A A G T C A C T G A C T G A T C G
p-value:1e-5
log p-value:-1.212e+01
Information Content per bp:1.914
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.40%
Number of Background Sequences with motif2.1
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets34.2 +/- 24.4bp
Average Position of motif in Background88.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.33
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZIC3/MA0697.1/Jaspar

Match Rank:1
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--CCCGTCGCAGCGTCTC
GACCCCCCGCTGCGC---
 A C G T A C G T A T G C A G T C A G T C C T A G A G C T G T A C A C T G A G T C C G T A A C T G A G T C A C T G A G C T A G T C C G A T A T G C
A C T G T C G A G T A C G A T C G T A C A G T C A G T C A G T C T C A G A G T C A C G T C A T G G A T C C A T G G T A C A C G T A C G T A C G T

ZIC1/MA0696.1/Jaspar

Match Rank:2
Score:0.52
Offset:-2
Orientation:forward strand
Alignment:--CCCGTCGCAGCGTCTC
GACCCCCCGCTGTG----
 A C G T A C G T A T G C A G T C A G T C C T A G A G C T G T A C A C T G A G T C C G T A A C T G A G T C A C T G A G C T A G T C C G A T A T G C
A C T G T C G A G T A C G T A C G T A C A G T C G T A C G A T C T C A G A G T C A C G T T C A G G A C T A C T G A C G T A C G T A C G T A C G T

PB0055.1_Rfx4_1/Jaspar

Match Rank:3
Score:0.51
Offset:-1
Orientation:forward strand
Alignment:-CCCGTCGCAGCGTCTC
TACCATAGCAACGGT--
 A C G T A T G C A G T C A G T C C T A G A G C T G T A C A C T G A G T C C G T A A C T G A G T C A C T G A G C T A G T C C G A T A T G C
A G C T G T C A T A G C A T G C G T C A A G C T T C G A C T A G G A T C C T G A C T G A A G T C T A C G T C A G C G A T A C G T A C G T

ZIC4/MA0751.1/Jaspar

Match Rank:4
Score:0.51
Offset:-2
Orientation:forward strand
Alignment:--CCCGTCGCAGCGTCTC
GACCCCCCGCTGTGC---
 A C G T A C G T A T G C A G T C A G T C C T A G A G C T G T A C A C T G A G T C C G T A A C T G A G T C A C T G A G C T A G T C C G A T A T G C
A C T G T C G A G T A C G T A C G T A C G T A C G T A C G A T C C T A G A G T C C A G T C T A G G A C T A C T G G T A C A C G T A C G T A C G T

GLIS2/MA0736.1/Jaspar

Match Rank:5
Score:0.50
Offset:-2
Orientation:forward strand
Alignment:--CCCGTCGCAGCGTCTC
GACCCCCCGCGAAG----
 A C G T A C G T A T G C A G T C A G T C C T A G A G C T G T A C A C T G A G T C C G T A A C T G A G T C A C T G A G C T A G T C C G A T A T G C
A C T G T C G A A G T C G T A C G A T C G T A C G T A C G A T C C T A G A G T C C T A G C T G A G T C A A T C G A C G T A C G T A C G T A C G T

NHLH1/MA0048.2/Jaspar

Match Rank:6
Score:0.50
Offset:5
Orientation:forward strand
Alignment:CCCGTCGCAGCGTCTC
-----CGCAGCTGCG-
 A T G C A G T C A G T C C T A G A G C T G T A C A C T G A G T C C G T A A C T G A G T C A C T G A G C T A G T C C G A T A T G C
A C G T A C G T A C G T A C G T A C G T T G A C T C A G G T A C T G C A A T C G T A G C A C G T T A C G G A T C A C T G A C G T

PB0054.1_Rfx3_1/Jaspar

Match Rank:7
Score:0.50
Offset:-5
Orientation:forward strand
Alignment:-----CCCGTCGCAGCGTCTC--
TGTGACCCTTAGCAACCGATTAA
 A C G T A C G T A C G T A C G T A C G T A T G C A G T C A G T C C T A G A G C T G T A C A C T G A G T C C G T A A C T G A G T C A C T G A G C T A G T C C G A T A T G C A C G T A C G T
G A C T C A T G A G C T A T C G G T C A G A T C T G A C A T G C G A C T A G C T T C G A C T A G G A T C C T G A C G T A A G T C T A G C T C A G C G T A G C A T G C A T G C T A G C T A

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:8
Score:0.50
Offset:-1
Orientation:forward strand
Alignment:-CCCGTCGCAGCGTCTC
CCGCATAGCAACGGA--
 A C G T A T G C A G T C A G T C C T A G A G C T G T A C A C T G A G T C C G T A A C T G A G T C A C T G A G C T A G T C C G A T A T G C
A G T C A G T C T A C G A T G C G C T A G A C T T C G A C T A G G A T C C T G A T C G A A G T C T A C G T C A G C T G A A C G T A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:9
Score:0.49
Offset:7
Orientation:forward strand
Alignment:CCCGTCGCAGCGTCTC
-------CAGCC----
 A T G C A G T C A G T C C T A G A G C T G T A C A C T G A G T C C G T A A C T G A G T C A C T G A G C T A G T C C G A T A T G C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:10
Score:0.48
Offset:5
Orientation:reverse strand
Alignment:CCCGTCGCAGCGTCTC
-----CACAGN-----
 A T G C A G T C A G T C C T A G A G C T G T A C A C T G A G T C C G T A A C T G A G T C A C T G A G C T A G T C C G A T A T G C
A C G T A C G T A C G T A C G T A C G T T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T A C G T A C G T