Information for 18-CTGCTGGGGCGTA (Motif 29)

A G T C C A G T C T A G A T G C A C G T A C T G A T C G A C T G C A T G G A T C C A T G A C G T T G C A
Reverse Opposite:
A C G T T G C A G T A C C T A G G T A C G T A C A T G C A G T C G T C A A T C G A G T C G T C A A C T G
p-value:1e-7
log p-value:-1.695e+01
Information Content per bp:1.700
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.53%
Number of Background Sequences with motif2.4
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets43.2 +/- 28.3bp
Average Position of motif in Background27.3 +/- 14.1bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.70
Offset:-4
Orientation:reverse strand
Alignment:----CTGCTGGGGCGTA
CCCCCTGCTGTG-----
 A C G T A C G T A C G T A C G T A G T C C A G T C T A G A T G C A C G T A C T G A T C G A C T G C A T G G A T C C A T G A C G T T G C A
G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G A C G T A C G T A C G T A C G T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:2
Score:0.67
Offset:-6
Orientation:forward strand
Alignment:------CTGCTGGGGCGTA
GGCCYCCTGCTGDGH----
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C C A G T C T A G A T G C A C G T A C T G A T C G A C T G C A T G G A T C C A T G A C G T T G C A
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C A C G T A C G T A C G T A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:3
Score:0.67
Offset:-4
Orientation:reverse strand
Alignment:----CTGCTGGGGCGTA
TNTCCTGCTGTGNNG--
 A C G T A C G T A C G T A C G T A G T C C A G T C T A G A T G C A C G T A C T G A T C G A C T G C A T G G A T C C A T G A C G T T G C A
G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G A C G T A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:4
Score:0.66
Offset:-4
Orientation:reverse strand
Alignment:----CTGCTGGGGCGTA
TCNCCTGCTGNGNNN--
 A C G T A C G T A C G T A C G T A G T C C A G T C T A G A T G C A C G T A C T G A T C G A C T G C A T G G A T C C A T G A C G T T G C A
G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G A C G T A C G T

SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer

Match Rank:5
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--CTGCTGGGGCGTA
ANCAGCTG-------
 A C G T A C G T A G T C C A G T C T A G A T G C A C G T A C T G A T C G A C T G C A T G G A T C C A T G A C G T T G C A
C T G A T C A G G T A C G C T A A C T G T G A C G C A T C A T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer

Match Rank:6
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---CTGCTGGGGCGTA
CAGCAGCTGN------
 A C G T A C G T A C G T A G T C C A G T C T A G A T G C A C G T A C T G A T C G A C T G C A T G G A T C C A T G A C G T T G C A
T G A C T C G A T C A G A G T C C G T A A T C G A T G C A C G T A C T G A G C T A C G T A C G T A C G T A C G T A C G T A C G T

Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer

Match Rank:7
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---CTGCTGGGGCGTA
NAACAGCTGG------
 A C G T A C G T A C G T A G T C C A G T C T A G A T G C A C G T A C T G A T C G A C T G C A T G G A T C C A T G A C G T T G C A
C G A T T G C A T G C A G A T C C G T A A C T G T G A C G A C T C A T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T

Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer

Match Rank:8
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--CTGCTGGGGCGTA
NVCAGCTGBBNN---
 A C G T A C G T A G T C C A G T C T A G A T G C A C G T A C T G A T C G A C T G C A T G G A T C C A T G A C G T T G C A
T C G A T A C G G T A C C G T A A T C G T G A C C G A T A C T G A T G C A T G C T C A G G A T C A C G T A C G T A C G T

Myog/MA0500.1/Jaspar

Match Rank:9
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--CTGCTGGGGCGTA
GACAGCTGCAG----
 A C G T A C G T A G T C C A G T C T A G A T G C A C G T A C T G A T C G A C T G C A T G G A T C C A T G A C G T T G C A
T C A G T C G A A G T C C G T A A C T G T A G C A C G T A C T G T A G C C T G A T A C G A C G T A C G T A C G T A C G T

PB0207.1_Zic3_2/Jaspar

Match Rank:10
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----CTGCTGGGGCGTA
NNTCCTGCTGTGNNN--
 A C G T A C G T A C G T A C G T A G T C C A G T C T A G A T G C A C G T A C T G A T C G A C T G C A T G G A T C C A T G A C G T T G C A
G C A T A T C G C A G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G G A C T A C T G G A T C G C A T G T A C A C G T A C G T