Information for 17-CKYSCAMTYRGAC (Motif 28)

A G T C A C T G A G C T A T G C A G T C C G T A G T C A A C G T A G C T C T A G A C T G C G T A A G T C
Reverse Opposite:
A C T G A C G T A G T C A G T C C T G A C G T A A C G T A C G T A C T G A T C G C T G A G T A C T A C G
p-value:1e-7
log p-value:-1.695e+01
Information Content per bp:1.820
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.53%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets60.2 +/- 34.6bp
Average Position of motif in Background25.7 +/- 18.8bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ISL2/MA0914.1/Jaspar

Match Rank:1
Score:0.59
Offset:3
Orientation:forward strand
Alignment:CKYSCAMTYRGAC
---GCACTTAA--
 A G T C A C T G A G C T A T G C A G T C C G T A G T C A A C G T A G C T C T A G A C T G C G T A A G T C
A C G T A C G T A C G T T A C G G A T C G C T A G T A C C G A T G A C T G C T A C T G A A C G T A C G T

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:2
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:CKYSCAMTYRGAC
---BCMATTAG--
 A G T C A C T G A G C T A T G C A G T C C G T A G T C A A C G T A G C T C T A G A C T G C G T A A G T C
A C G T A C G T A C G T A C T G A G T C G T C A G T C A A C G T A G C T C G T A T C A G A C G T A C G T

NFY(CCAAT)/Promoter/Homer

Match Rank:3
Score:0.59
Offset:1
Orientation:forward strand
Alignment:CKYSCAMTYRGAC
-AGCCAATCGG--
 A G T C A C T G A G C T A T G C A G T C C G T A G T C A A C G T A G C T C T A G A C T G C G T A A G T C
A C G T T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G A C G T A C G T

PH0089.1_Isx/Jaspar

Match Rank:4
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-CKYSCAMTYRGAC--
ACNNCTAATTAGNNNN
 A C G T A G T C A C T G A G C T A T G C A G T C C G T A G T C A A C G T A G C T C T A G A C T G C G T A A G T C A C G T A C G T
G C T A A T G C T A C G T G C A G A T C A G C T G C T A C G T A C G A T C A G T C T G A C T A G A C T G C T G A A C T G C G A T

NFYB/MA0502.1/Jaspar

Match Rank:5
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----CKYSCAMTYRGAC
AAATGGACCAATCAG--
 A C G T A C G T A C G T A C G T A G T C A C T G A G C T A T G C A G T C C G T A G T C A A C G T A G C T C T A G A C T G C G T A A G T C
T C G A G T C A G T C A A G C T A T C G T C A G C T G A A G T C A G T C C G T A C T G A A C G T T A G C T C G A T A C G A C G T A C G T

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:6
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:CKYSCAMTYRGAC
-MRSCACTYAA--
 A G T C A C T G A G C T A T G C A G T C C G T A G T C A A C G T A G C T C T A G A C T G C G T A A G T C
A C G T G T C A C T G A T A G C A G T C C G T A G T A C G C A T A G T C C T G A T C G A A C G T A C G T

NKX2-3/MA0672.1/Jaspar

Match Rank:7
Score:0.57
Offset:2
Orientation:forward strand
Alignment:CKYSCAMTYRGAC
--ACCACTTGAA-
 A G T C A C T G A G C T A T G C A G T C C G T A G T C A A C G T A G C T C T A G A C T G C G T A A G T C
A C G T A C G T T G C A T A G C G A T C G C T A G T A C A C G T A G C T T C A G C G T A T C G A A C G T

MSX1/MA0666.1/Jaspar

Match Rank:8
Score:0.56
Offset:3
Orientation:forward strand
Alignment:CKYSCAMTYRGAC
---CCAATTAG--
 A G T C A C T G A G C T A T G C A G T C C G T A G T C A A C G T A G C T C T A G A C T G C G T A A G T C
A C G T A C G T A C G T A T G C G A T C T G C A G T C A A C G T A C G T T G C A T C A G A C G T A C G T

MSX2/MA0708.1/Jaspar

Match Rank:9
Score:0.56
Offset:3
Orientation:forward strand
Alignment:CKYSCAMTYRGAC
---CCAATTAA--
 A G T C A C T G A G C T A T G C A G T C C G T A G T C A A C G T A G C T C T A G A C T G C G T A A G T C
A C G T A C G T A C G T T A G C G A T C G T C A G T C A A C G T A G C T G T C A T C G A A C G T A C G T

Msx3/MA0709.1/Jaspar

Match Rank:10
Score:0.56
Offset:3
Orientation:forward strand
Alignment:CKYSCAMTYRGAC
---CCAATTAA--
 A G T C A C T G A G C T A T G C A G T C C G T A G T C A A C G T A G C T C T A G A C T G C G T A A G T C
A C G T A C G T A C G T T A G C G A T C T C G A T G C A A C G T G A C T C G T A T C G A A C G T A C G T