Information for 15-AGCCATCAATATC (Motif 25)

C G T A A C T G A G T C A G T C C G T A A G C T A G T C G T C A C G T A A C G T C G T A A C G T A G T C
Reverse Opposite:
A C T G C G T A A C G T C G T A C G A T A C G T A C T G C T G A A C G T A C T G A C T G A G T C A C G T
p-value:1e-8
log p-value:-1.971e+01
Information Content per bp:1.946
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.53%
Number of Background Sequences with motif0.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets36.5 +/- 10.1bp
Average Position of motif in Background87.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0134.1_Pbx1/Jaspar

Match Rank:1
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--AGCCATCAATATC--
TCACCCATCAATAAACA
 A C G T A C G T C G T A A C T G A G T C A G T C C G T A A G C T A G T C G T C A C G T A A C G T C G T A A C G T A G T C A C G T A C G T
G A C T A G T C C G T A G A T C G T A C T G A C C T G A C G A T G T A C G T C A G C T A C G A T G T A C G C T A C G A T T G A C T G C A

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:2
Score:0.61
Offset:0
Orientation:forward strand
Alignment:AGCCATCAATATC
GGCCATTAAC---
 C G T A A C T G A G T C A G T C C G T A A G C T A G T C G T C A C G T A A C G T C G T A A C G T A G T C
C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C A C G T A C G T A C G T

PH0064.1_Hoxb9/Jaspar

Match Rank:3
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--AGCCATCAATATC-
AGAGCCATAAAATTCG
 A C G T A C G T C G T A A C T G A G T C A G T C C G T A A G C T A G T C G T C A C G T A A C G T C G T A A C G T A G T C A C G T
T C A G T C A G T C G A A T C G G A T C G T A C C T G A G A C T C G T A C G T A C G T A C G T A G C A T G A C T G T A C C T A G

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:4
Score:0.60
Offset:0
Orientation:forward strand
Alignment:AGCCATCAATATC
GGCCATAAATCA-
 C G T A A C T G A G T C A G T C C G T A A G C T A G T C G T C A C G T A A C G T C G T A A C G T A G T C
C T A G T A C G A G T C G T A C T C G A A C G T G T C A G C T A G C T A C G A T A G T C G C T A A C G T

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:5
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:AGCCATCAATATC
RGCCATYAATCA-
 C G T A A C T G A G T C A G T C C G T A A G C T A G T C G T C A C G T A A C G T C G T A A C G T A G T C
C T A G T A C G G A T C T G A C T C G A A C G T G A C T G C T A T C G A A G C T G A T C G C T A A C G T

Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer

Match Rank:6
Score:0.59
Offset:0
Orientation:forward strand
Alignment:AGCCATCAATATC
HNRAATCAAT---
 C G T A A C T G A G T C A G T C C G T A A G C T A G T C G T C A C G T A A C G T C G T A A C G T A G T C
G C T A A C T G T C G A C T G A C T G A A C G T T A G C C T G A C G T A C G A T A C G T A C G T A C G T

Hoxa9/MA0594.1/Jaspar

Match Rank:7
Score:0.59
Offset:1
Orientation:forward strand
Alignment:AGCCATCAATATC
-GCCATAAATCA-
 C G T A A C T G A G T C A G T C C G T A A G C T A G T C G T C A C G T A A C G T C G T A A C G T A G T C
A C G T T A C G G A T C G T A C T C G A A C G T T G C A G C T A G T C A C G A T G A T C G C T A A C G T

Hoxc9/MA0485.1/Jaspar

Match Rank:8
Score:0.58
Offset:0
Orientation:forward strand
Alignment:AGCCATCAATATC
GGCCATAAATCAC
 C G T A A C T G A G T C A G T C C G T A A G C T A G T C G T C A C G T A A C G T C G T A A C G T A G T C
C T A G T A C G G A T C G T A C C T G A A G C T T G C A C G T A G T C A C G A T G A T C G C T A A G T C

PH0169.1_Tgif1/Jaspar

Match Rank:9
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----AGCCATCAATATC
NNNCAGCTGTCAATATN
 A C G T A C G T A C G T A C G T C G T A A C T G A G T C A G T C C G T A A G C T A G T C G T C A C G T A A C G T C G T A A C G T A G T C
G C T A T G A C A T C G A T G C T G C A A T C G G A T C A G C T A C T G C G A T A G T C C G T A G C T A C G A T T G C A G A C T G T A C

Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer

Match Rank:10
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:AGCCATCAATATC
-GCTAAAAATAGC
 C G T A A C T G A G T C A G T C C G T A A G C T A G T C G T C A C G T A A C G T C G T A A C G T A G T C
A C G T A C T G G T A C G A C T G C T A C G T A C G T A C G T A G C T A G C A T C T G A T C A G G T A C