Information for 24-GAGGTCAACG (Motif 33)

C A T G T G C A C T A G T C A G C G A T G A T C C G T A C T G A T A G C A C T G
Reverse Opposite:
G T A C A T C G G A C T C G A T C T A G G C T A A G T C G A T C A C G T G T A C
p-value:1e-1
log p-value:-3.516e+00
Information Content per bp:1.736
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif0.14%
Number of Background Sequences with motif2.3
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets92.0 +/- 0.0bp
Average Position of motif in Background54.3 +/- 3.8bp
Strand Bias (log2 ratio + to - strand density)-10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:1
Score:0.78
Offset:-1
Orientation:forward strand
Alignment:-GAGGTCAACG
AGRGGTCA---
 A C G T C A T G T G C A C T A G T C A G C G A T G A T C C G T A C T G A T A G C A C T G
T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T A C G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:2
Score:0.77
Offset:-1
Orientation:forward strand
Alignment:-GAGGTCAACG
TRAGGTCA---
 A C G T C A T G T G C A C T A G T C A G C G A T G A T C C G T A C T G A T A G C A C T G
G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T

NR2F1/MA0017.2/Jaspar

Match Rank:3
Score:0.75
Offset:-2
Orientation:forward strand
Alignment:--GAGGTCAACG-
CAAAGGTCAAGGG
 A C G T A C G T C A T G T G C A C T A G T C A G C G A T G A T C C G T A C T G A T A G C A C T G A C G T
G T A C G C T A C T G A C T G A A T C G A C T G A C G T A G T C C T G A G T C A T C A G T C A G C T A G

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:4
Score:0.74
Offset:1
Orientation:forward strand
Alignment:GAGGTCAACG---
-AGGTCAAGGTCA
 C A T G T G C A C T A G T C A G C G A T G A T C C G T A C T G A T A G C A C T G A C G T A C G T A C G T
A C G T T C G A A C T G C A T G A G C T A G T C C G T A C T G A C T A G A C T G C G A T A T G C C T G A

PB0030.1_Hnf4a_1/Jaspar

Match Rank:5
Score:0.73
Offset:-5
Orientation:forward strand
Alignment:-----GAGGTCAACG--
CTCCAGGGGTCAATTGA
 A C G T A C G T A C G T A C G T A C G T C A T G T G C A C T A G T C A G C G A T G A T C C G T A C T G A T A G C A C T G A C G T A C G T
A T G C C A G T A G C T T G A C G T C A T C A G C T A G A C T G A C T G A C G T A G T C T G C A G T C A A G C T G C A T C A T G T G C A

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:6
Score:0.73
Offset:1
Orientation:forward strand
Alignment:GAGGTCAACG
-AGGTCA---
 C A T G T G C A C T A G T C A G C G A T G A T C C G T A C T G A T A G C A C T G
A C G T C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T A C G T

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:7
Score:0.73
Offset:1
Orientation:forward strand
Alignment:GAGGTCAACG---
-AGGTCAAGGTCA
 C A T G T G C A C T A G T C A G C G A T G A T C C G T A C T G A T A G C A C T G A C G T A C G T A C G T
A C G T C T G A C T A G A C T G G C A T A T G C C G T A C T G A C T A G A C T G A C G T A G T C C T G A

PB0118.1_Esrra_2/Jaspar

Match Rank:8
Score:0.71
Offset:-5
Orientation:forward strand
Alignment:-----GAGGTCAACG--
GGCGAGGGGTCAAGGGC
 A C G T A C G T A C G T A C G T A C G T C A T G T G C A C T A G T C A G C G A T G A T C C G T A C T G A T A G C A C T G A C G T A C G T
T A C G C A T G A T G C A C T G G C T A T A C G T C A G C A T G A C T G C G A T A G T C C T G A G C T A C T A G A T C G A T C G G T A C

PB0057.1_Rxra_1/Jaspar

Match Rank:9
Score:0.71
Offset:-5
Orientation:reverse strand
Alignment:-----GAGGTCAACG--
NTNNNGGGGTCANGNNN
 A C G T A C G T A C G T A C G T A C G T C A T G T G C A C T A G T C A G C G A T G A T C C G T A C T G A T A G C A C T G A C G T A C G T
T C G A C A G T A G C T C T G A G C T A T C A G C T A G A C T G A C T G A C G T A G T C C T G A G T A C T C A G C G T A T A G C G C T A

RORA/MA0071.1/Jaspar

Match Rank:10
Score:0.71
Offset:-3
Orientation:forward strand
Alignment:---GAGGTCAACG
ATCAAGGTCA---
 A C G T A C G T A C G T C A T G T G C A C T A G T C A G C G A T G A T C C G T A C T G A T A G C A C T G
C G T A G C A T T G A C C G T A C T G A A C T G A C T G A C G T A G T C C G T A A C G T A C G T A C G T