Information for 2-GGKARTATCAAGCATT (Motif 3)

C A T G A C T G A C T G C G T A C T G A C G A T T C G A C G A T A T G C C G T A T C G A C T A G A G T C C G T A G C A T A C G T
Reverse Opposite:
C G T A C G T A C G A T C T A G A G T C A C G T A C G T A T C G C G T A A C G T C G T A G A C T A C G T G T A C A G T C G T A C
p-value:1e-15
log p-value:-3.545e+01
Information Content per bp:1.729
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.12%
Number of Background Sequences with motif4.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets45.2 +/- 26.7bp
Average Position of motif in Background39.6 +/- 15.4bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ATF4/MA0833.1/Jaspar

Match Rank:1
Score:0.54
Offset:4
Orientation:forward strand
Alignment:GGKARTATCAAGCATT-
----GGATGATGCAATA
 C A T G A C T G A C T G C G T A C T G A C G A T T C G A C G A T A T G C C G T A T C G A C T A G A G T C C G T A G C A T A C G T A C G T
A C G T A C G T A C G T A C G T C T A G C A T G T G C A A C G T C T A G C G T A A G C T C A T G G A T C G T C A G C T A A G C T T G C A

Nr2e3/MA0164.1/Jaspar

Match Rank:2
Score:0.54
Offset:8
Orientation:forward strand
Alignment:GGKARTATCAAGCATT
--------CAAGCTT-
 C A T G A C T G A C T G C G T A C T G A C G A T T C G A C G A T A T G C C G T A T C G A C T A G A G T C C G T A G C A T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A T C C G T A C G T A A T C G A G T C A C G T A C G T A C G T

Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer

Match Rank:3
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:GGKARTATCAAGCATT
-GWAAYHTGABMC---
 C A T G A C T G A C T G C G T A C T G A C G A T T C G A C G A T A T G C C G T A T C G A C T A G A G T C C G T A G C A T A C G T
A C G T A C T G C G A T G T C A C G T A A G T C G T A C G C A T A C T G C G T A A C G T G T A C G A T C A C G T A C G T A C G T

Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer

Match Rank:4
Score:0.52
Offset:1
Orientation:forward strand
Alignment:GGKARTATCAAGCATT
-GWAAYHTGAKMC---
 C A T G A C T G A C T G C G T A C T G A C G A T T C G A C G A T A T G C C G T A T C G A C T A G A G T C C G T A G C A T A C G T
A C G T C T A G C G T A G T C A C G T A A G T C G A T C A G C T C T A G C G T A A C G T G T C A G A T C A C G T A C G T A C G T

PB0144.1_Lef1_2/Jaspar

Match Rank:5
Score:0.52
Offset:2
Orientation:forward strand
Alignment:GGKARTATCAAGCATT--
--GAAGATCAATCACTTA
 C A T G A C T G A C T G C G T A C T G A C G A T T C G A C G A T A T G C C G T A T C G A C T A G A G T C C G T A G C A T A C G T A C G T A C G T
A C G T A C G T T A C G C G T A T C G A T A C G G C T A C G A T A G T C C G T A C T G A C A G T G A T C C T G A G T A C A G C T G C A T C G T A

CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer

Match Rank:6
Score:0.51
Offset:-4
Orientation:forward strand
Alignment:----GGKARTATCAAGCATT
NTNATGCAAYMNNHTGMAAY
 A C G T A C G T A C G T A C G T C A T G A C T G A C T G C G T A C T G A C G A T T C G A C G A T A T G C C G T A T C G A C T A G A G T C C G T A G C A T A C G T
T G C A G C A T C G A T C G T A C A G T A C T G G T A C C G T A C T G A A G C T G T C A A C T G C T A G G T C A C G A T A C T G G T A C T G C A C G T A A G C T

PH0139.1_Pitx3/Jaspar

Match Rank:7
Score:0.50
Offset:-3
Orientation:forward strand
Alignment:---GGKARTATCAAGCATT
AGGGGGATTAGCTGCC---
 A C G T A C G T A C G T C A T G A C T G A C T G C G T A C T G A C G A T T C G A C G A T A T G C C G T A T C G A C T A G A G T C C G T A G C A T A C G T
T C G A C T A G T A C G C T A G C T A G A C T G G T C A A G C T G A C T C G T A C A T G A T G C A C G T C T A G A T G C A T G C A C G T A C G T A C G T

PB0188.1_Tcf7l2_2/Jaspar

Match Rank:8
Score:0.48
Offset:2
Orientation:forward strand
Alignment:GGKARTATCAAGCATT--
--GAAGATCAATCACTAA
 C A T G A C T G A C T G C G T A C T G A C G A T T C G A C G A T A T G C C G T A T C G A C T A G A G T C C G T A G C A T A C G T A C G T A C G T
A C G T A C G T T A C G C T A G T C G A T A C G G C T A G C A T A G T C C G T A C T G A C A G T G A T C C T G A A T G C A C G T G C T A C G T A

Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer

Match Rank:9
Score:0.48
Offset:6
Orientation:forward strand
Alignment:GGKARTATCAAGCATT
------MTGATGCAAT
 C A T G A C T G A C T G C G T A C T G A C G A T T C G A C G A T A T G C C G T A T C G A C T A G A G T C C G T A G C A T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T G C A A G C T C A T G C G T A A G C T A C T G G A T C G T C A C G T A A G C T

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:10
Score:0.48
Offset:5
Orientation:forward strand
Alignment:GGKARTATCAAGCATT
-----TBGCACGCAA-
 C A T G A C T G A C T G C G T A C T G A C G A T T C G A C G A T A T G C C G T A T C G A C T A G A G T C C G T A G C A T A C G T
A C G T A C G T A C G T A C G T A C G T G C A T A T C G C A T G G T A C G C T A A G T C T C A G T G A C G T C A T G C A A C G T