Information for 10-KKAGCWWATCACC (Motif 10)

A C G T A C T G C G T A A C T G A G T C G C A T C G T A C G T A A C G T A G T C C G T A A G T C A G T C
Reverse Opposite:
C T A G A C T G A C G T A C T G C G T A A C G T C G A T C G T A A C T G A G T C A C G T G T A C G T C A
p-value:1e-10
log p-value:-2.496e+01
Information Content per bp:1.873
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.58%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets46.8 +/- 21.7bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.20
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0139.1_Pitx3/Jaspar

Match Rank:1
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-KKAGCWWATCACC--
GNNAGCTAATCCCCCN
 A C G T A C G T A C T G C G T A A C T G A G T C G C A T C G T A C G T A A C G T A G T C C G T A A G T C A G T C A C G T A C G T
A T C G T A C G G A T C G T C A T A C G G T A C C G A T C G T A C T G A A C G T A G T C A G T C G A T C A T G C A G T C A G C T

PH0049.1_Hoxa2/Jaspar

Match Rank:2
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-KKAGCWWATCACC--
NTGAGCTAATTACCNT
 A C G T A C G T A C T G C G T A A C T G A G T C G C A T C G T A C G T A A C G T A G T C C G T A A G T C A G T C A C G T A C G T
G C T A G C A T C A T G C T G A C T A G A T G C G A C T T G C A G T C A A C G T A C G T C T G A T A G C G A T C A C G T G A C T

PH0045.1_Hoxa1/Jaspar

Match Rank:3
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-KKAGCWWATCACC--
CTGAGCTAATTACCGT
 A C G T A C G T A C T G C G T A A C T G A G T C G C A T C G T A C G T A A C G T A G T C C G T A A G T C A G T C A C G T A C G T
A G T C G A C T C T A G C T G A T C A G A T G C G A C T T G C A C G T A C G A T A C G T C T G A T G A C A G T C A C T G A G C T

DUXA/MA0884.1/Jaspar

Match Rank:4
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-KKAGCWWATCACC
CTAATTTAATCAA-
 A C G T A C G T A C T G C G T A A C T G A G T C G C A T C G T A C G T A A C G T A G T C C G T A A G T C A G T C
G A T C G A C T C T G A T C G A G A C T A G C T A G C T T G C A C T G A A C G T A G T C C G T A C T G A A C G T

Hoxb5/MA0904.1/Jaspar

Match Rank:5
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-KKAGCWWATCACC--
ATGNGCTAATTANCNT
 A C G T A C G T A C T G C G T A A C T G A G T C G C A T C G T A C G T A A C G T A G T C C G T A A G T C A G T C A C G T A C G T
C G T A G A C T C A T G C G T A C T A G A T G C G A C T G T C A G C T A C A G T A C G T C T G A T G A C G A T C A C T G A C G T

PH0060.1_Hoxb5/Jaspar

Match Rank:6
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-KKAGCWWATCACC--
ATGNGCTAATTANCNT
 A C G T A C G T A C T G C G T A A C T G A G T C G C A T C G T A C G T A A C G T A G T C C G T A A G T C A G T C A C G T A C G T
C G T A G A C T C A T G C G T A C T A G A T G C G A C T G T C A G C T A C A G T A C G T C T G A T G A C G A T C A C T G A C G T

PH0081.1_Pdx1/Jaspar

Match Rank:7
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-KKAGCWWATCACC--
NTGNGCTAATTACCNN
 A C G T A C G T A C T G C G T A A C T G A G T C G C A T C G T A C G T A A C G T A G T C C G T A A G T C A G T C A C G T A C G T
G T C A G A C T A T C G C G T A C T A G A T G C G A C T T G C A G C T A C A G T A C G T C T G A T A G C G A T C A C G T A C G T

Gfi1/MA0038.1/Jaspar

Match Rank:8
Score:0.62
Offset:4
Orientation:forward strand
Alignment:KKAGCWWATCACC-
----CAAATCACTG
 A C G T A C T G C G T A A C T G A G T C G C A T C G T A C G T A A C G T A G T C C G T A A G T C A G T C A C G T
A C G T A C G T A C G T A C G T A G T C T G C A C G T A C G T A C A G T G T A C G C T A T A G C G C A T T A C G

PH0123.1_Obox3/Jaspar

Match Rank:9
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:KKAGCWWATCACC----
ATAGTTAATCCCCCNNA
 A C G T A C T G C G T A A C T G A G T C G C A T C G T A C G T A A C G T A G T C C G T A A G T C A G T C A C G T A C G T A C G T A C G T
C T G A C A G T G C T A C A T G G C A T G C A T C G T A G T C A C A G T G T A C G A T C G A T C G A T C A T G C A G C T T A G C C G T A

PH0052.1_Hoxa5/Jaspar

Match Rank:10
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-KKAGCWWATCACC--
NTGAGCTAATTACCNT
 A C G T A C G T A C T G C G T A A C T G A G T C G C A T C G T A C G T A A C G T A G T C C G T A A G T C A G T C A C G T A C G T
G A T C G C A T C A T G C G T A C T A G A T G C G A C T G T C A G T C A A C G T A C G T C T G A T G A C G A T C A C T G A G C T