Information for 10-CAGTCACCHADGGCGT (Motif 9)

G T A C C G T A A C T G A C G T A G T C C G T A A G T C A T G C G C T A C G T A C A G T C A T G A C T G A G T C C T A G A C G T
Reverse Opposite:
C G T A A G T C A C T G A G T C G T A C G C T A C G A T C A G T A T C G A C T G C G A T A C T G C G T A A G T C C G A T A C T G
p-value:1e-13
log p-value:-3.145e+01
Information Content per bp:1.781
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.83%
Number of Background Sequences with motif1.1
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets40.5 +/- 21.3bp
Average Position of motif in Background42.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:1
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-CAGTCACCHADGGCGT
SCAGYCADGCATGAC--
 A C G T G T A C C G T A A C T G A C G T A G T C C G T A A G T C A T G C G C T A C G T A C A G T C A T G A C T G A G T C C T A G A C G T
A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C A C G T A C G T

Pax2/MA0067.1/Jaspar

Match Rank:2
Score:0.55
Offset:1
Orientation:forward strand
Alignment:CAGTCACCHADGGCGT
-AGTCACGC-------
 G T A C C G T A A C T G A C G T A G T C C G T A A G T C A T G C G C T A C G T A C A G T C A T G A C T G A G T C C T A G A C G T
A C G T G C T A C T A G G C A T A G T C C T G A G A T C C A T G A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0199.1_Zfp161_2/Jaspar

Match Rank:3
Score:0.54
Offset:2
Orientation:forward strand
Alignment:CAGTCACCHADGGCGT
--GCCGCGCAGTGCGT
 G T A C C G T A A C T G A C G T A G T C C G T A A G T C A T G C G C T A C G T A C A G T C A T G A C T G A G T C C T A G A C G T
A C G T A C G T C A T G G A T C A G T C T A C G G A T C C T A G T G A C G T C A C T A G A C G T C T A G G T A C T C A G A G C T

MEIS3/MA0775.1/Jaspar

Match Rank:4
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-CAGTCACCHADGGCGT
CCTGTCAA---------
 A C G T G T A C C G T A A C T G A C G T A G T C C G T A A G T C A T G C G C T A C G T A C A G T C A T G A C T G A G T C C T A G A C G T
T A G C T G A C G A C T C T A G G A C T A T G C C G T A G C T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

MEIS1/MA0498.2/Jaspar

Match Rank:5
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:CAGTCACCHADGGCGT
NTGTCAN---------
 G T A C C G T A A C T G A C G T A G T C C G T A A G T C A T G C G C T A C G T A C A G T C A T G A C T G A G T C C T A G A C G T
G A T C G A C T C T A G A C G T A T G C C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:6
Score:0.51
Offset:-2
Orientation:forward strand
Alignment:--CAGTCACCHADGGCGT
VGCTGWCAVB--------
 A C G T A C G T G T A C C G T A A C T G A C G T A G T C C G T A A G T C A T G C G C T A C G T A C A G T C A T G A C T G A G T C C T A G A C G T
T C A G T A C G T A G C A C G T A C T G C G A T A G T C C G T A T A C G A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

MEIS2/MA0774.1/Jaspar

Match Rank:7
Score:0.51
Offset:-1
Orientation:reverse strand
Alignment:-CAGTCACCHADGGCGT
GCTGTCAA---------
 A C G T G T A C C G T A A C T G A C G T A G T C C G T A A G T C A T G C G C T A C G T A C A G T C A T G A C T G A G T C C T A G A C G T
A T C G A T G C A C G T C A T G G C A T A G T C G T C A G C T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0180.1_Sp4_2/Jaspar

Match Rank:8
Score:0.50
Offset:7
Orientation:forward strand
Alignment:CAGTCACCHADGGCGT------
-------CAAAGGCGTGGCCAG
 G T A C C G T A A C T G A C G T A G T C C G T A A G T C A T G C G C T A C G T A C A G T C A T G A C T G A G T C C T A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A C G T A T C G A A T C G A C T G G T A C A C T G A C G T C T A G A C T G G A T C G A T C G T C A C A T G

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:9
Score:0.50
Offset:-2
Orientation:forward strand
Alignment:--CAGTCACCHADGGCGT
GSCTGTCACTCA------
 A C G T A C G T G T A C C G T A A C T G A C G T A G T C C G T A A G T C A T G C G C T A C G T A C A G T C A T G A C T G A G T C C T A G A C G T
C T A G A T G C A T G C C G A T A C T G G A C T A T G C G C T A T G A C A G C T T A G C G C T A A C G T A C G T A C G T A C G T A C G T A C G T

TFAP2A(var.2)/MA0810.1/Jaspar

Match Rank:10
Score:0.48
Offset:3
Orientation:forward strand
Alignment:CAGTCACCHADGGCGT
---TGCCCCCGGGCA-
 G T A C C G T A A C T G A C G T A G T C C G T A A G T C A T G C G C T A C G T A C A G T C A T G A C T G A G T C C T A G A C G T
A C G T A C G T A C G T G A C T T A C G T A G C A G T C A G T C A G T C T G A C T C A G T C A G A T C G A T G C C T G A A C G T