Information for 12-GAGMGACGCA (Motif 40)

A C T G C G T A A T C G G T A C C A T G C G T A A G T C A C T G A G T C C G T A
Reverse Opposite:
A C G T A C T G A G T C A C T G A C G T G T A C A C T G A T G C A C G T A G T C
p-value:1e-6
log p-value:-1.534e+01
Information Content per bp:1.900
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.97%
Number of Background Sequences with motif25.4
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets30.6 +/- 23.5bp
Average Position of motif in Background51.0 +/- 35.1bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.14
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0151.1_Myf6_2/Jaspar

Match Rank:1
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---GAGMGACGCA--
AGCAACAGCCGCACC
 A C G T A C G T A C G T A C T G C G T A A T C G G T A C C A T G C G T A A G T C A C T G A G T C C G T A A C G T A C G T
T C G A T A C G T G A C T C G A T G C A G A T C T C G A C T A G T G A C T A G C A T C G T A G C C T G A T G A C G A T C

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:2
Score:0.59
Offset:4
Orientation:reverse strand
Alignment:GAGMGACGCA
----CACGCA
 A C T G C G T A A T C G G T A C C A T G C G T A A G T C A C T G A G T C C G T A
A C G T A C G T A C G T A C G T A G T C C G T A G T A C C T A G G T A C C T G A

PB0179.1_Sp100_2/Jaspar

Match Rank:3
Score:0.59
Offset:-5
Orientation:reverse strand
Alignment:-----GAGMGACGCA
NNTTTANNCGACGNA
 A C G T A C G T A C G T A C G T A C G T A C T G C G T A A T C G G T A C C A T G C G T A A G T C A C T G A G T C C G T A
T A G C G C A T C G A T C G A T C G A T G T C A T G C A C A T G A G T C A C T G C G T A A G T C C T A G T A C G T C G A

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:4
Score:0.57
Offset:1
Orientation:forward strand
Alignment:GAGMGACGCA-
-TBGCACGCAA
 A C T G C G T A A T C G G T A C C A T G C G T A A G T C A C T G A G T C C G T A A C G T
A C G T G C A T A T C G C A T G G T A C G C T A A G T C T C A G T G A C G T C A T G C A

ATF4/MA0833.1/Jaspar

Match Rank:5
Score:0.56
Offset:0
Orientation:forward strand
Alignment:GAGMGACGCA---
GGATGATGCAATA
 A C T G C G T A A T C G G T A C C A T G C G T A A G T C A C T G A G T C C G T A A C G T A C G T A C G T
C T A G C A T G T G C A A C G T C T A G C G T A A G C T C A T G G A T C G T C A G C T A A G C T T G C A

Atf1/MA0604.1/Jaspar

Match Rank:6
Score:0.56
Offset:2
Orientation:forward strand
Alignment:GAGMGACGCA
--ATGACGTA
 A C T G C G T A A T C G G T A C C A T G C G T A A G T C A C T G A G T C C G T A
A C G T A C G T T C G A G C A T A C T G C G T A A G T C C T A G G A C T T C G A

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.54
Offset:-4
Orientation:forward strand
Alignment:----GAGMGACGCA
AGGTGHCAGACA--
 A C G T A C G T A C G T A C G T A C T G C G T A A T C G G T A C C A T G C G T A A G T C A C T G A G T C C G T A
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T A C G T

Gmeb1/MA0615.1/Jaspar

Match Rank:8
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--GAGMGACGCA-----
NNNTNGTACGTAANNNN
 A C G T A C G T A C T G C G T A A T C G G T A C C A T G C G T A A G T C A C T G A G T C C G T A A C G T A C G T A C G T A C G T A C G T
A T G C A G T C T C G A G C A T A T G C C A G T C A G T T C G A A G T C C T A G A G C T G T C A G T A C T G C A T G A C C A G T T A G C

PB0027.1_Gmeb1_1/Jaspar

Match Rank:9
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--GAGMGACGCA-----
NNNTNGTACGTAANNNN
 A C G T A C G T A C T G C G T A A T C G G T A C C A T G C G T A A G T C A C T G A G T C C G T A A C G T A C G T A C G T A C G T A C G T
A T G C A G T C T C G A G C A T A T G C C A G T C A G T T C G A A G T C C T A G A G C T G T C A G T A C T G C A T G A C C A G T T A G C

FOSL1/MA0477.1/Jaspar

Match Rank:10
Score:0.51
Offset:1
Orientation:forward strand
Alignment:GAGMGACGCA--
-GGTGACTCATG
 A C T G C G T A A T C G G T A C C A T G C G T A A G T C A C T G A G T C C G T A A C G T A C G T
A C G T C T A G T C A G A C G T A C T G C G T A T A G C A C G T G T A C C G T A A C G T T A C G