Information for 25-TGCATGATACATT (Motif 39)

A C G T A C T G A G T C C G T A A C G T A C T G C G T A C G A T C G T A A G T C G T C A A C G T A C G T
Reverse Opposite:
T G C A C G T A A C G T A C T G C G A T C G T A A C G T A G T C C G T A A C G T A C T G A G T C C G T A
p-value:1e-7
log p-value:-1.699e+01
Information Content per bp:1.931
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.56%
Number of Background Sequences with motif2.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets71.0 +/- 15.0bp
Average Position of motif in Background72.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer

Match Rank:1
Score:0.75
Offset:-3
Orientation:reverse strand
Alignment:---TGCATGATACATT
WYATGCATWATGCAT-
 A C G T A C G T A C G T A C G T A C T G A G T C C G T A A C G T A C T G C G T A C G A T C G T A A G T C G T C A A C G T A C G T
C G T A A G C T C G T A A C G T A C T G G T A C C G T A A C G T C G A T C G T A A C G T A C T G A G T C C G T A C G A T A C G T

DMRT3/MA0610.1/Jaspar

Match Rank:2
Score:0.73
Offset:2
Orientation:reverse strand
Alignment:TGCATGATACATT
--NTTGATACATT
 A C G T A C T G A G T C C G T A A C G T A C T G C G T A C G A T C G T A A G T C G T C A A C G T A C G T
A C G T A C G T C G T A C G A T A C G T A C T G G C T A A C G T C G T A A G T C C G T A C G A T A C G T

OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:3
Score:0.73
Offset:-3
Orientation:reverse strand
Alignment:---TGCATGATACATT
TCATGAATWATTCAT-
 A C G T A C G T A C G T A C G T A C T G A G T C C G T A A C G T A C T G C G T A C G A T C G T A A G T C G T C A A C G T A C G T
G A C T G A T C G C T A C G A T C T A G G T C A C G T A C G A T G C A T C G T A G C A T C A G T A G T C G T C A C A G T A C G T

Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:4
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:TGCATGATACATT
TGAATTATGCAT-
 A C G T A C T G A G T C C G T A A C G T A C T G C G T A C G A T C G T A A G T C G T C A A C G T A C G T
C G A T C T A G G T C A G C T A C G A T G C A T G C T A C G A T C A T G G A T C G C T A C G A T A C G T

POU4F1/MA0790.1/Jaspar

Match Rank:5
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-TGCATGATACATT
ATGAATAATTAATG
 A C G T A C G T A C T G A G T C C G T A A C G T A C T G C G T A C G A T C G T A A G T C G T C A A C G T A C G T
T C G A G A C T C T A G G T C A G C T A C G A T C G T A C G T A C G A T C G A T C G T A T C G A G A C T C A T G

POU4F3/MA0791.1/Jaspar

Match Rank:6
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-TGCATGATACATT--
ATGCATAATTAATGAG
 A C G T A C G T A C T G A G T C C G T A A C G T A C T G C G T A C G A T C G T A A G T C G T C A A C G T A C G T A C G T A C G T
C T G A A G C T C A T G G T A C G C T A C G A T C G T A C G T A C G A T C G A T C G T A C T G A G A C T C A T G G T C A T C A G

NFE2/MA0841.1/Jaspar

Match Rank:7
Score:0.64
Offset:2
Orientation:forward strand
Alignment:TGCATGATACATT
--CATGACTCATC
 A C G T A C T G A G T C C G T A A C G T A C T G C G T A C G A T C G T A A G T C G T C A A C G T A C G T
A C G T A C G T T G A C T C G A G A C T A C T G G T C A T A G C A G C T G A T C T G C A A G C T A T G C

JDP2/MA0655.1/Jaspar

Match Rank:8
Score:0.64
Offset:3
Orientation:reverse strand
Alignment:TGCATGATACATT
---ATGAGTCAT-
 A C G T A C T G A G T C C G T A A C G T A C T G C G T A C G A T C G T A A G T C G T C A A C G T A C G T
A C G T A C G T A C G T C T G A C G A T C A T G G C T A A T C G G C A T T G A C C T G A A G C T A C G T

POU4F2/MA0683.1/Jaspar

Match Rank:9
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-TGCATGATACATT--
ATGCATAATTAATGAG
 A C G T A C G T A C T G A G T C C G T A A C G T A C T G C G T A C G A T C G T A A G T C G T C A A C G T A C G T A C G T A C G T
C T G A G A C T C T A G G T A C G C T A C G A T C G T A G C T A G C A T G C A T C T G A T C G A A C G T A C T G C T G A T C A G

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:10
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:TGCATGATACATT--
---ATGATKGATGRC
 A C G T A C T G A G T C C G T A A C G T A C T G C G T A C G A T C G T A A G T C G T C A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C T G A C G A T A T C G C G T A C G A T C A G T C T A G C G T A C G A T A C T G C T G A A T G C