Information for 20-AGTCAGGCATGCCTAG (Motif 30)

C G T A C T A G C G A T T A G C G T C A A C T G C A T G A T G C G T C A C A G T A C T G A T G C A G T C C G A T C T G A A C T G
Reverse Opposite:
G T A C A G C T G C T A C T A G T A C G G T A C G C T A A C G T A T C G G A T C A G T C A C G T A C T G C G T A G A T C G C A T
p-value:1e-9
log p-value:-2.088e+01
Information Content per bp:1.703
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.11%
Number of Background Sequences with motif18.6
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets61.9 +/- 19.2bp
Average Position of motif in Background58.2 +/- 32.5bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:1
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--AGTCAGGCATGCCTAG
SCAGYCADGCATGAC---
 A C G T A C G T C G T A C T A G C G A T T A G C G T C A A C T G C A T G A T G C G T C A C A G T A C T G A T G C A G T C C G A T C T G A A C T G
A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C A C G T A C G T A C G T

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:2
Score:0.58
Offset:3
Orientation:forward strand
Alignment:AGTCAGGCATGCCTAG
---AAGGCAAGTGT--
 C G T A C T A G C G A T T A G C G T C A A C T G C A T G A T G C G T C A C A G T A C T G A T G C A G T C C G A T C T G A A C T G
A C G T A C G T A C G T T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T A C G T A C G T

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:AGTCAGGCATGCCTAG
NGTCACGCTTGGCTGC
 C G T A C T A G C G A T T A G C G T C A A C T G C A T G A T G C G T C A C A G T A C T G A T G C A G T C C G A T C T G A A C T G
C T A G A C T G A G C T A G T C G T C A G A T C T C A G A T G C G C A T G A C T A T C G T C A G T A G C G A C T C T A G T G A C

ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:4
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-AGTCAGGCATGCCTAG
AGGGAAGTCATTTCT--
 A C G T C G T A C T A G C G A T T A G C G T C A A C T G C A T G A T G C G T C A C A G T A C T G A T G C A G T C C G A T C T G A A C T G
C T G A C T A G C T A G T C A G C G T A C T G A C T A G A G C T G T A C C T G A A G C T A G C T A C G T G A T C G A C T A C G T A C G T

PAX1/MA0779.1/Jaspar

Match Rank:5
Score:0.54
Offset:0
Orientation:forward strand
Alignment:AGTCAGGCATGCCTAG-
CGTCACGCATGACTGCA
 C G T A C T A G C G A T T A G C G T C A A C T G C A T G A T G C G T C A C A G T A C T G A T G C A G T C C G A T C T G A A C T G A C G T
A T G C C A T G G C A T G A T C T G C A G A T C C A T G A T G C G C T A G A C T A T C G T C G A T A G C G A C T C A T G T G A C G T C A

PB0180.1_Sp4_2/Jaspar

Match Rank:6
Score:0.53
Offset:1
Orientation:forward strand
Alignment:AGTCAGGCATGCCTAG
-CAAAGGCGTGGCCAG
 C G T A C T A G C G A T T A G C G T C A A C T G C A T G A T G C G T C A C A G T A C T G A T G C A G T C C G A T C T G A A C T G
A C G T A G T C C G T A C G T A T C G A A T C G A C T G G T A C A C T G A C G T C T A G A C T G G A T C G A T C G T C A C A T G

TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer

Match Rank:7
Score:0.53
Offset:6
Orientation:reverse strand
Alignment:AGTCAGGCATGCCTAG
------RCATTCCWGG
 C G T A C T A G C G A T T A G C G T C A A C T G C A T G A T G C G T C A C A G T A C T G A T G C A G T C C G A T C T G A A C T G
A C G T A C G T A C G T A C G T A C G T A C G T C T G A T G A C C T G A A C G T C G A T A G T C A G T C G C T A C T A G T A C G

PAX9/MA0781.1/Jaspar

Match Rank:8
Score:0.52
Offset:0
Orientation:forward strand
Alignment:AGTCAGGCATGCCTAG-
CGTCACGCATGACTGCA
 C G T A C T A G C G A T T A G C G T C A A C T G C A T G A T G C G T C A C A G T A C T G A T G C A G T C C G A T C T G A A C T G A C G T
A T G C A C T G G C A T A G T C T G C A A G T C A C T G A T G C G C T A G A C T A T C G C T G A T A G C G A C T C A T G T G A C G T C A

TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer

Match Rank:9
Score:0.52
Offset:6
Orientation:reverse strand
Alignment:AGTCAGGCATGCCTAG
------RCATTCCWGG
 C G T A C T A G C G A T T A G C G T C A A C T G C A T G A T G C G T C A C A G T A C T G A T G C A G T C C G A T C T G A A C T G
A C G T A C G T A C G T A C G T A C G T A C G T C T A G T G A C C G T A C G A T C G A T A G T C G T A C C G T A A T C G A T C G

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:10
Score:0.52
Offset:-3
Orientation:reverse strand
Alignment:---AGTCAGGCATGCCTAG
AGGTGNCAGACAG------
 A C G T A C G T A C G T C G T A C T A G C G A T T A G C G T C A A C T G C A T G A T G C G T C A C A G T A C T G A T G C A G T C C G A T C T G A A C T G
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G A C G T A C G T A C G T A C G T A C G T A C G T