Information for 19-CTGGCCTGCTTGTGAT (Motif 27)

T A G C A C G T C T A G A C T G A G T C A G T C A C G T A C T G A G T C A C G T A C G T C T A G A C G T A T C G C G T A A C G T
Reverse Opposite:
G T C A A C G T A T G C C G T A A G T C G T C A C G T A A C T G A G T C C G T A C T A G A C T G A G T C A G T C T C G A A C T G
p-value:1e-9
log p-value:-2.206e+01
Information Content per bp:1.899
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.69%
Number of Background Sequences with motif2.3
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets58.4 +/- 33.1bp
Average Position of motif in Background45.3 +/- 4.5bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.51
Offset:-3
Orientation:reverse strand
Alignment:---CTGGCCTGCTTGTGAT
NNACTTGCCTT--------
 A C G T A C G T A C G T T A G C A C G T C T A G A C T G A G T C A G T C A C G T A C T G A G T C A C G T A C G T C T A G A C G T A T C G C G T A A C G T
T C G A G A T C T G C A A G T C G A C T A G C T A C T G A G T C G A T C G C A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer

Match Rank:2
Score:0.51
Offset:0
Orientation:forward strand
Alignment:CTGGCCTGCTTGTGAT
GGGGCTYGKCTGGGA-
 T A G C A C G T C T A G A C T G A G T C A G T C A C G T A C T G A G T C A C G T A C G T C T A G A C G T A T C G C G T A A C G T
C T A G C A T G C A T G T A C G A G T C G C A T A G C T C T A G A C G T A G T C G A C T A C T G A C T G A C T G T C G A A C G T

RARA::RXRA/MA0159.1/Jaspar

Match Rank:3
Score:0.50
Offset:1
Orientation:reverse strand
Alignment:CTGGCCTGCTTGTGAT--
-TGACCTCTCNNTGACCT
 T A G C A C G T C T A G A C T G A G T C A G T C A C G T A C T G A G T C A C G T A C G T C T A G A C G T A T C G C G T A A C G T A C G T A C G T
A C G T G A C T T A C G G T C A T G A C A G T C A C G T A T G C G A C T A G T C A T G C T C A G A G C T T A C G G T C A G T A C A G T C A G C T

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:4
Score:0.50
Offset:1
Orientation:reverse strand
Alignment:CTGGCCTGCTTGTGAT
-TGACCTARTT-----
 T A G C A C G T C T A G A C T G A G T C A G T C A C G T A C T G A G T C A C G T A C G T C T A G A C G T A T C G C G T A A C G T
A C G T A G C T C T A G T C G A A G T C A T G C A G C T T G C A T C A G G C A T C G A T A C G T A C G T A C G T A C G T A C G T

POL006.1_BREu/Jaspar

Match Rank:5
Score:0.49
Offset:2
Orientation:reverse strand
Alignment:CTGGCCTGCTTGTGAT
--GGCGCGCT------
 T A G C A C G T C T A G A C T G A G T C A G T C A C G T A C T G A G T C A C G T A C G T C T A G A C G T A T C G C G T A A C G T
A C G T A C G T C T A G T A C G A G T C A C T G A G T C A T C G A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Mitf/MA0620.1/Jaspar

Match Rank:6
Score:0.49
Offset:7
Orientation:reverse strand
Alignment:CTGGCCTGCTTGTGAT-
-------NCACGTGACN
 T A G C A C G T C T A G A C T G A G T C A G T C A C G T A C T G A G T C A C G T A C G T C T A G A C G T A T C G C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C G T A C C G T A A G T C T C A G C A G T A C T G T G C A A G T C G A T C

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:7
Score:0.49
Offset:0
Orientation:reverse strand
Alignment:CTGGCCTGCTTGTGAT--
BTGACCTCTNNHTGACCY
 T A G C A C G T C T A G A C T G A G T C A G T C A C G T A C T G A G T C A C G T A C G T C T A G A C G T A T C G C G T A A C G T A C G T A C G T
A T C G A C G T A T C G T G C A G T A C A G T C A G C T A T G C C G A T T A C G A T G C G T A C G A C T T A C G T G C A G T A C G A T C A G C T

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:8
Score:0.49
Offset:5
Orientation:reverse strand
Alignment:CTGGCCTGCTTGTGAT
-----TTGCGTGCVA-
 T A G C A C G T C T A G A C T G A G T C A G T C A C G T A C T G A G T C A C G T A C G T C T A G A C G T A T C G C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C A G T A C T G A G T C T C A G C G A T C A T G G T A C T A G C C G T A A C G T

Zfx/MA0146.2/Jaspar

Match Rank:9
Score:0.48
Offset:-6
Orientation:forward strand
Alignment:------CTGGCCTGCTTGTGAT
GGGGCCGAGGCCTG--------
 A C G T A C G T A C G T A C G T A C G T A C G T T A G C A C G T C T A G A C T G A G T C A G T C A C G T A C T G A G T C A C G T A C G T C T A G A C G T A T C G C G T A A C G T
A T C G A T C G T A C G C T A G A T G C G A T C A C T G T G C A T C A G A T C G A G T C A G T C A G C T T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Dux/MA0611.1/Jaspar

Match Rank:10
Score:0.48
Offset:5
Orientation:reverse strand
Alignment:CTGGCCTGCTTGTGAT
-----TTGATTGN---
 T A G C A C G T C T A G A C T G A G T C A G T C A C G T A C T G A G T C A C G T A C G T C T A G A C G T A T C G C G T A A C G T
A C G T A C G T A C G T A C G T A C G T G A C T A C G T A C T G C G T A A C G T A C G T C T A G A T C G A C G T A C G T A C G T