Information for 12-GCCGTCTGGGACT (Motif 9)

A C T G A G T C A G T C A C T G A C G T A G T C A C G T A C T G A C T G A C T G C G T A A G T C A C G T
Reverse Opposite:
C G T A A C T G A C G T A G T C A G T C A G T C C G T A A C T G C G T A A G T C A C T G A C T G A G T C
p-value:1e-8
log p-value:-1.956e+01
Information Content per bp:1.530
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.54%
Number of Background Sequences with motif0.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets51.0 +/- 31.1bp
Average Position of motif in Background70.7 +/- 16.7bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-GCCGTCTGGGACT
VBSYGTCTGG----
 A C G T A C T G A G T C A G T C A C T G A C G T A G T C A C G T A C T G A C T G A C T G C G T A A G T C A C G T
T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T A C G T A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.69
Offset:1
Orientation:forward strand
Alignment:GCCGTCTGGGACT
-CTGTCTGG----
 A C T G A G T C A G T C A C T G A C G T A G T C A C G T A C T G A C T G A C T G C G T A A G T C A C G T
A C G T A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T A C G T A C G T

ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer

Match Rank:3
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-GCCGTCTGGGACT-
RGSMTBCTGGGAAAT
 A C G T A C T G A G T C A G T C A C T G A C G T A G T C A C G T A C T G A C T G A C T G C G T A A G T C A C G T A C G T
C T A G A C T G T A G C G T C A A G C T A G C T T G A C G A C T A C T G A C T G A C T G C G T A T C G A C G T A A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:4
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---GCCGTCTGGGACT-
NNTNNTGTCTGGNNTNG
 A C G T A C G T A C G T A C T G A G T C A G T C A C T G A C G T A G T C A C G T A C T G A C T G A C T G C G T A A G T C A C G T A C G T
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:5
Score:0.61
Offset:2
Orientation:forward strand
Alignment:GCCGTCTGGGACT
--GGTCTGGCAT-
 A C T G A G T C A G T C A C T G A C G T A G T C A C G T A C T G A C T G A C T G C G T A A G T C A C G T
A C G T A C G T A T C G C T A G G A C T A G T C A C G T A C T G A T C G G T A C C G T A C G A T A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:GCCGTCTGGGACT-
--TGTCTGDCACCT
 A C T G A G T C A G T C A C T G A C G T A G T C A C G T A C T G A C T G A C T G C G T A A G T C A C G T A C G T
A C G T A C G T G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:7
Score:0.57
Offset:1
Orientation:forward strand
Alignment:GCCGTCTGGGACT-
-CTGTCTGTCACCT
 A C T G A G T C A G T C A C T G A C G T A G T C A C G T A C T G A C T G A C T G C G T A A G T C A C G T A C G T
A C G T T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T

PB0114.1_Egr1_2/Jaspar

Match Rank:8
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-GCCGTCTGGGACT--
TGCGGAGTGGGACTGG
 A C G T A C T G A G T C A G T C A C T G A C G T A G T C A C G T A C T G A C T G A C T G C G T A A G T C A C G T A C G T A C G T
A C G T A C T G G A T C A C T G C T A G T C G A C T A G C A G T C T A G C A T G C A T G C G T A G A T C G C A T C T A G A C T G

Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer

Match Rank:9
Score:0.56
Offset:-4
Orientation:forward strand
Alignment:----GCCGTCTGGGACT
GGGGCTYGKCTGGGA--
 A C G T A C G T A C G T A C G T A C T G A G T C A G T C A C T G A C G T A G T C A C G T A C T G A C T G A C T G C G T A A G T C A C G T
C T A G C A T G C A T G T A C G A G T C G C A T A G C T C T A G A C G T A G T C G A C T A C T G A C T G A C T G T C G A A C G T A C G T

GFY-Staf(?,Zf)/Promoter/Homer

Match Rank:10
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:GCCGTCTGGGACT-------
GCATTCTGGGAATTGTAGTT
 A C T G A G T C A G T C A C T G A C G T A G T C A C G T A C T G A C T G A C T G C G T A A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
T C A G T A G C G T C A A G C T A C G T A G T C A G C T A C T G A C T G C T A G C G T A C T G A C G A T A G C T A C T G A C G T C T G A A C T G A C G T A G C T