Information for 6-SAMMTCTTWGTCM (Motif 5)

A T G C G T C A G T C A G T C A A C G T A G T C G C A T A C G T G C A T A C T G G C A T A G T C G T C A
Reverse Opposite:
A C G T C T A G C G T A G T A C C G T A T G C A C G T A A C T G T G C A A C G T A C G T C A G T A T C G
p-value:1e-12
log p-value:-2.906e+01
Information Content per bp:1.657
Number of Target Sequences with motif24.0
Percentage of Target Sequences with motif3.23%
Number of Background Sequences with motif202.1
Percentage of Background Sequences with motif0.45%
Average Position of motif in Targets41.5 +/- 17.0bp
Average Position of motif in Background48.8 +/- 31.3bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:1
Score:0.64
Offset:4
Orientation:forward strand
Alignment:SAMMTCTTWGTCM-
----YCTTTGTTCC
 A T G C G T C A G T C A G T C A A C G T A G T C G C A T A C G T G C A T A C T G G C A T A G T C G T C A A C G T
A C G T A C G T A C G T A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A G T C A G T C

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:2
Score:0.64
Offset:4
Orientation:forward strand
Alignment:SAMMTCTTWGTCM-
----CCWTTGTYYB
 A T G C G T C A G T C A G T C A A C G T A G T C G C A T A C G T G C A T A C T G G C A T A G T C G T C A A C G T
A C G T A C G T A C G T A C G T A T G C A G T C G C A T A G C T A C G T T C A G C G A T A G C T G A T C A T C G

SOX10/MA0442.1/Jaspar

Match Rank:3
Score:0.62
Offset:5
Orientation:forward strand
Alignment:SAMMTCTTWGTCM
-----CTTTGT--
 A T G C G T C A G T C A G T C A A C G T A G T C G C A T A C G T G C A T A C T G G C A T A G T C G T C A
A C G T A C G T A C G T A C G T A C G T A G T C C G A T A C G T A C G T A T C G A C G T A C G T A C G T

Sox6/MA0515.1/Jaspar

Match Rank:4
Score:0.60
Offset:4
Orientation:forward strand
Alignment:SAMMTCTTWGTCM-
----CCATTGTTTT
 A T G C G T C A G T C A G T C A A C G T A G T C G C A T A C G T G C A T A C T G G C A T A G T C G T C A A C G T
A C G T A C G T A C G T A C G T A G T C A G T C C G T A A C G T A C G T A C T G A C G T A G C T G A C T A G C T

RXRA::VDR/MA0074.1/Jaspar

Match Rank:5
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-SAMMTCTTWGTCM-
TGAACCCGATGACCC
 A C G T A T G C G T C A G T C A G T C A A C G T A G T C G C A T A C G T G C A T A C T G G C A T A G T C G T C A A C G T
A G C T C T A G C G T A C G T A A G T C A G C T A G T C A C T G C G A T A G C T C T A G C G T A G T A C A G T C A G T C

VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer

Match Rank:6
Score:0.58
Offset:-4
Orientation:reverse strand
Alignment:----SAMMTCTTWGTCM---
NNNTGAACTCNNTGACCTCN
 A C G T A C G T A C G T A C G T A T G C G T C A G T C A G T C A A C G T A G T C G C A T A C G T G C A T A C T G G C A T A G T C G T C A A C G T A C G T A C G T
G T A C G A T C G T C A G C A T T C A G G T C A G T C A G T A C A G C T A G T C C G T A T A C G G C A T T A C G T G C A G T A C G A T C G A C T A G T C G A C T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:7
Score:0.57
Offset:4
Orientation:forward strand
Alignment:SAMMTCTTWGTCM
----CCWTTGTY-
 A T G C G T C A G T C A G T C A A C G T A G T C G C A T A C G T G C A T A C T G G C A T A G T C G T C A
A C G T A C G T A C G T A C G T A T G C G A T C C G A T A C G T A C G T A C T G C A G T A G C T A C G T

Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer

Match Rank:8
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-SAMMTCTTWGTCM
AGGVNCCTTTGT--
 A C G T A T G C G T C A G T C A G T C A A C G T A G T C G C A T A C G T G C A T A C T G G C A T A G T C G T C A
C G T A C T A G T C A G T C A G A G T C A T G C A G T C G C A T A G C T A C G T A T C G C G A T A C G T A C G T

Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer

Match Rank:9
Score:0.56
Offset:7
Orientation:forward strand
Alignment:SAMMTCTTWGTCM--
-------YTGWCADY
 A T G C G T C A G T C A G T C A A C G T A G T C G C A T A C G T G C A T A C T G G C A T A G T C G T C A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T G C A T C T A G C G A T G A T C T C G A C A T G G A T C

Sox17/MA0078.1/Jaspar

Match Rank:10
Score:0.56
Offset:3
Orientation:forward strand
Alignment:SAMMTCTTWGTCM
---CTCATTGTC-
 A T G C G T C A G T C A G T C A A C G T A G T C G C A T A C G T G C A T A C T G G C A T A G T C G T C A
A C G T A C G T A C G T G A C T G A C T G A T C C G T A A G C T A C G T A C T G A C G T A T G C A C G T