Information for 4-CTTAGCCCATGTCTGA (Motif 10)

A G T C C A G T A C G T T C G A T A C G A G T C G T A C G T A C C G T A C G A T C T A G A C G T G T A C A C G T A C T G C G T A
Reverse Opposite:
C G A T A G T C C G T A A C T G G T C A A G T C C G T A C G A T C A T G A C T G A C T G A G T C A C G T G T C A G T C A C T A G
p-value:1e-8
log p-value:-1.956e+01
Information Content per bp:1.734
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.54%
Number of Background Sequences with motif0.5
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets32.0 +/- 29.0bp
Average Position of motif in Background91.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:1
Score:0.58
Offset:8
Orientation:forward strand
Alignment:CTTAGCCCATGTCTGA
--------TWGTCTGV
 A G T C C A G T A C G T T C G A T A C G A G T C G T A C G T A C C G T A C G A T C T A G A C G T G T A C A C G T A C T G C G T A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G

POL002.1_INR/Jaspar

Match Rank:2
Score:0.55
Offset:8
Orientation:reverse strand
Alignment:CTTAGCCCATGTCTGA
--------NNNANTGA
 A G T C C A G T A C G T T C G A T A C G A G T C G T A C G T A C C G T A C G A T C T A G A C G T G T A C A C G T A C T G C G T A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A T C G A C T A G C T G A T A G C C G A T A C T G G T C A

PB0060.1_Smad3_1/Jaspar

Match Rank:3
Score:0.55
Offset:4
Orientation:reverse strand
Alignment:CTTAGCCCATGTCTGA-----
----NNTNNTGTCTGGNNTNG
 A G T C C A G T A C G T T C G A T A C G A G T C G T A C G T A C C G T A C G A T C T A G A C G T G T A C A C G T A C T G C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:4
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:CTTAGCCCATGTCTGA---
-BTGACCTCTNNHTGACCY
 A G T C C A G T A C G T T C G A T A C G A G T C G T A C G T A C C G T A C G A T C T A G A C G T G T A C A C G T A C T G C G T A A C G T A C G T A C G T
A C G T A T C G A C G T A T C G T G C A G T A C A G T C A G C T A T G C C G A T T A C G A T G C G T A C G A C T T A C G T G C A G T A C G A T C A G C T

PAX9/MA0781.1/Jaspar

Match Rank:5
Score:0.52
Offset:0
Orientation:forward strand
Alignment:CTTAGCCCATGTCTGA-
CGTCACGCATGACTGCA
 A G T C C A G T A C G T T C G A T A C G A G T C G T A C G T A C C G T A C G A T C T A G A C G T G T A C A C G T A C T G C G T A A C G T
A T G C A C T G G C A T A G T C T G C A A G T C A C T G A T G C G C T A G A C T A T C G C T G A T A G C G A C T C A T G T G A C G T C A

RARA(var.2)/MA0730.1/Jaspar

Match Rank:6
Score:0.52
Offset:2
Orientation:reverse strand
Alignment:CTTAGCCCATGTCTGA---
--TGACCTTTGCATGACCT
 A G T C C A G T A C G T T C G A T A C G A G T C G T A C G T A C C G T A C G A T C T A G A C G T G T A C A C G T A C T G C G T A A C G T A C G T A C G T
A C G T A C G T G A C T T A C G T G C A T G A C G T A C A G C T A G C T G C A T T C A G T A G C C T G A A C G T C T A G T G C A T G A C G T A C A G C T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.52
Offset:8
Orientation:forward strand
Alignment:CTTAGCCCATGTCTGA
--------CTGTCTGG
 A G T C C A G T A C G T T C G A T A C G A G T C G T A C G T A C C G T A C G A T C T A G A C G T G T A C A C G T A C T G C G T A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.52
Offset:6
Orientation:forward strand
Alignment:CTTAGCCCATGTCTGA
------VBSYGTCTGG
 A G T C C A G T A C G T T C G A T A C G A G T C G T A C G T A C C G T A C G A T C T A G A C G T G T A C A C G T A C T G C G T A
A C G T A C G T A C G T A C G T A C G T A C G T T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G

TBX1/MA0805.1/Jaspar

Match Rank:9
Score:0.52
Offset:8
Orientation:forward strand
Alignment:CTTAGCCCATGTCTGA
--------AGGTGTGA
 A G T C C A G T A C G T T C G A T A C G A G T C G T A C G T A C C G T A C G A T C T A G A C G T G T A C A C G T A C T G C G T A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A T C A G A C T G A G C T A T C G G A C T A C T G T G C A

Rarb(var.2)/MA0858.1/Jaspar

Match Rank:10
Score:0.50
Offset:2
Orientation:reverse strand
Alignment:CTTAGCCCATGTCTGA---
--TGACCTTTANTTGACCT
 A G T C C A G T A C G T T C G A T A C G A G T C G T A C G T A C C G T A C G A T C T A G A C G T G T A C A C G T A C T G C G T A A C G T A C G T A C G T
A C G T A C G T G A C T C T A G T G C A T G A C A G T C G A C T A G C T G C A T T C G A A C T G C A G T A G C T A T C G C T G A G T A C A T G C A G C T