Information for 3-CGGGTTAWCATGGGCT (Motif 6)

A G T C T C A G A C T G A C T G C G A T A C G T C G T A C G A T A T G C G C T A A C G T C T A G C T A G C T A G A G T C A C G T
Reverse Opposite:
C G T A T C A G A G T C A G T C A G T C T G C A C A G T A T C G C G T A C G A T G T C A C G T A A G T C G T A C A G T C T C A G
p-value:1e-15
log p-value:-3.481e+01
Information Content per bp:1.719
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.06%
Number of Background Sequences with motif3.1
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets51.1 +/- 24.7bp
Average Position of motif in Background55.6 +/- 14.4bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0109.1_Bbx_2/Jaspar

Match Rank:1
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--CGGGTTAWCATGGGCT
TGATTGTTAACAGTTGG-
 A C G T A C G T A G T C T C A G A C T G A C T G C G A T A C G T C G T A C G A T A T G C G C T A A C G T C T A G C T A G C T A G A G T C A C G T
G A C T T C A G G C T A G A C T A C G T C A T G C A G T A G C T T C G A G T C A G T A C T C G A A T C G G C A T A C G T C T A G T C A G A C G T

ZNF410/MA0752.1/Jaspar

Match Rank:2
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:CGGGTTAWCATGGGCT---
--GANTATTATGGGATGGA
 A G T C T C A G A C T G A C T G C G A T A C G T C G T A C G A T A T G C G C T A A C G T C T A G C T A G C T A G A G T C A C G T A C G T A C G T A C G T
A C G T A C G T C A T G T C G A C A T G G A C T C T G A A G C T A C G T C T G A C A G T A T C G A C T G C A T G G T C A C G A T C T A G A C T G T G C A

PH0161.1_Six1/Jaspar

Match Rank:3
Score:0.52
Offset:-2
Orientation:forward strand
Alignment:--CGGGTTAWCATGGGCT
GATGGGGTATCATTTTT-
 A C G T A C G T A G T C T C A G A C T G A C T G C G A T A C G T C G T A C G A T A T G C G C T A A C G T C T A G C T A G C T A G A G T C A C G T
C T A G G C T A C A G T T C A G C T A G A T C G T C A G A C G T C T G A A C G T G A T C C T G A G A C T C A G T G C A T A C G T C A G T A C G T

LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer

Match Rank:4
Score:0.52
Offset:1
Orientation:forward strand
Alignment:CGGGTTAWCATGGGCT-
-GGGTTACTANAGGTCA
 A G T C T C A G A C T G A C T G C G A T A C G T C G T A C G A T A T G C G C T A A C G T C T A G C T A G C T A G A G T C A C G T A C G T
A C G T C T A G C A T G C A T G A G C T G A C T C G T A G A T C A G C T G T C A A T G C T C G A C T A G C A T G A C G T A G T C C T G A

PH0167.1_Tcf1/Jaspar

Match Rank:5
Score:0.51
Offset:-3
Orientation:reverse strand
Alignment:---CGGGTTAWCATGGGCT
NTTTTAGTTAACNNAGN--
 A C G T A C G T A C G T A G T C T C A G A C T G A C T G C G A T A C G T C G T A C G A T A T G C G C T A A C G T C T A G C T A G C T A G A G T C A C G T
T G C A G A C T G C A T A C G T G A C T C T G A A T C G G C A T C G A T C G T A C T G A T A G C A G C T T C G A T G C A T A C G C T A G A C G T A C G T

PB0081.1_Tcf1_1/Jaspar

Match Rank:6
Score:0.51
Offset:-3
Orientation:reverse strand
Alignment:---CGGGTTAWCATGGGCT
NNNTTAGTTAACTNANN--
 A C G T A C G T A C G T A G T C T C A G A C T G A C T G C G A T A C G T C G T A C G A T A T G C G C T A A C G T C T A G C T A G C T A G A G T C A C G T
G A C T C A G T G A C T A G C T G A C T C T G A T A C G G A C T C G A T C G T A C G T A A G T C A G C T C T G A T C G A C T A G A C G T A C G T A C G T

PH0162.1_Six2/Jaspar

Match Rank:7
Score:0.50
Offset:-2
Orientation:forward strand
Alignment:--CGGGTTAWCATGGGCT
AATGGGGTATCACGTTT-
 A C G T A C G T A G T C T C A G A C T G A C T G C G A T A C G T C G T A C G A T A T G C G C T A A C G T C T A G C T A G C T A G A G T C A C G T
C T G A G C T A C A G T T C A G C T A G A C T G C T A G A C G T C T G A A C G T G A T C C T G A G A T C C A G T G C A T G A C T C A G T A C G T

PH0168.1_Hnf1b/Jaspar

Match Rank:8
Score:0.50
Offset:-1
Orientation:forward strand
Alignment:-CGGGTTAWCATGGGCT
AGCTGTTAACTAGCCGT
 A C G T A G T C T C A G A C T G A C T G C G A T A C G T C G T A C G A T A T G C G C T A A C G T C T A G C T A G C T A G A G T C A C G T
C G T A A C T G A G T C A C G T C T A G G C A T G A C T C G T A G C T A A G T C A G C T C G T A T C A G A G T C G A T C A T C G A G C T

PB0059.1_Six6_1/Jaspar

Match Rank:9
Score:0.50
Offset:-2
Orientation:forward strand
Alignment:--CGGGTTAWCATGGGCT
AATAGGGTATCATATAT-
 A C G T A C G T A G T C T C A G A C T G A C T G C G A T A C G T C G T A C G A T A T G C G C T A A C G T C T A G C T A G C T A G A G T C A C G T
C T G A G C T A C G A T T C G A C T A G A C T G T C A G A C G T C T G A A C G T G A T C C T G A G A C T C G T A C G A T G C T A G A C T A C G T

Spz1/MA0111.1/Jaspar

Match Rank:10
Score:0.49
Offset:1
Orientation:forward strand
Alignment:CGGGTTAWCATGGGCT
-AGGGTAACAGC----
 A G T C T C A G A C T G A C T G C G A T A C G T C G T A C G A T A T G C G C T A A C G T C T A G C T A G C T A G A G T C A C G T
A C G T C T G A A T C G C T A G A C T G C A G T C G T A C G T A T A G C C T G A A C T G T A G C A C G T A C G T A C G T A C G T