Information for 3-CATCTVCTGCTGG (Motif 7)

A G T C C G T A A C G T A T G C G A C T T C G A A G T C A C G T A C T G A T G C A C G T A C T G T A C G
Reverse Opposite:
A G T C A G T C C G T A A T C G T A G C C G T A A C T G A C G T C G T A A T C G T C G A C G A T A C T G
p-value:1e-18
log p-value:-4.282e+01
Information Content per bp:1.805
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif1.53%
Number of Background Sequences with motif1.6
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets42.1 +/- 13.5bp
Average Position of motif in Background35.5 +/- 1.4bp
Strand Bias (log2 ratio + to - strand density)-0.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.68
Offset:2
Orientation:reverse strand
Alignment:CATCTVCTGCTGG-
--CCCCCTGCTGTG
 A G T C C G T A A C G T A T G C G A C T T C G A A G T C A C G T A C T G A T G C A C G T A C T G T A C G A C G T
A C G T A C G T G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G

PB0206.1_Zic2_2/Jaspar

Match Rank:2
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:CATCTVCTGCTGG----
--TCNCCTGCTGNGNNN
 A G T C C G T A A C G T A T G C G A C T T C G A A G T C A C G T A C T G A T G C A C G T A C T G T A C G A C G T A C G T A C G T A C G T
A C G T A C G T G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G

PB0205.1_Zic1_2/Jaspar

Match Rank:3
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:CATCTVCTGCTGG----
--TNTCCTGCTGTGNNG
 A G T C C G T A A C G T A T G C G A C T T C G A A G T C A C G T A C T G A T G C A C G T A C T G T A C G A C G T A C G T A C G T A C G T
A C G T A C G T G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:4
Score:0.64
Offset:0
Orientation:forward strand
Alignment:CATCTVCTGCTGG--
GGCCYCCTGCTGDGH
 A G T C C G T A A C G T A T G C G A C T T C G A A G T C A C G T A C T G A T G C A C G T A C T G T A C G A C G T A C G T
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C

Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer

Match Rank:5
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:CATCTVCTGCTGG
---CAGCAGCTGN
 A G T C C G T A A C G T A T G C G A C T T C G A A G T C A C G T A C T G A T G C A C G T A C T G T A C G
A C G T A C G T A C G T T G A C T C G A T C A G A G T C C G T A A T C G A T G C A C G T A C T G A G C T

PB0003.1_Ascl2_1/Jaspar

Match Rank:6
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--CATCTVCTGCTGG--
CTCAGCAGCTGCTACTG
 A C G T A C G T A G T C C G T A A C G T A T G C G A C T T C G A A G T C A C G T A C T G A T G C A C G T A C T G T A C G A C G T A C G T
A G T C A C G T A G T C T C G A T C A G A G T C C G T A A T C G T A G C C G A T A C T G A G T C A G C T T G A C G A T C G C A T C A T G

CTCF/MA0139.1/Jaspar

Match Rank:7
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---CATCTVCTGCTGG---
TAGCGCCCCCTGGTGGCCA
 A C G T A C G T A C G T A G T C C G T A A C G T A T G C G A C T T C G A A G T C A C G T A C T G A T G C A C G T A C T G T A C G A C G T A C G T A C G T
A G C T C T G A A T C G G A T C C A T G G T A C G A T C G T A C G A T C G A T C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

Ascl2/MA0816.1/Jaspar

Match Rank:8
Score:0.61
Offset:1
Orientation:forward strand
Alignment:CATCTVCTGCTGG
-AGCAGCTGCT--
 A G T C C G T A A C G T A T G C G A C T T C G A A G T C A C G T A C T G A T G C A C G T A C T G T A C G
A C G T T C G A T C A G G T A C C G T A A T C G T G A C C G A T A C T G A G T C G A C T A C G T A C G T

SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer

Match Rank:9
Score:0.61
Offset:4
Orientation:forward strand
Alignment:CATCTVCTGCTGG
----ANCAGCTG-
 A G T C C G T A A C G T A T G C G A C T T C G A A G T C A C G T A C T G A T G C A C G T A C T G T A C G
A C G T A C G T A C G T A C G T C T G A T C A G G T A C G C T A A C T G T G A C G C A T C A T G A C G T

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:10
Score:0.60
Offset:-6
Orientation:forward strand
Alignment:------CATCTVCTGCTGG-
CNNBRGCGCCCCCTGSTGGC
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C G T A T G C G A C T T C G A A G T C A C G T A C T G A T G C A C G T A C T G T A C G A C G T
T A G C A G T C T G A C A G T C C T A G A T C G A G T C C A T G T G A C A G T C G T A C A G T C A G T C G C A T C T A G A T C G G C A T A C T G A T C G G A T C