Information for 23-ATAGACGCTC (Motif 38)

C G T A A C G T C G T A A C T G C G T A A G T C A C T G A G T C A C G T A G T C
Reverse Opposite:
A C T G C G T A A C T G A G T C A C T G A C G T A G T C A C G T C G T A A C G T
p-value:1e-6
log p-value:-1.600e+01
Information Content per bp:1.530
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.71%
Number of Background Sequences with motif1.5
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets30.8 +/- 18.7bp
Average Position of motif in Background55.3 +/- 26.6bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0151.1_Myf6_2/Jaspar

Match Rank:1
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----ATAGACGCTC-
AGCAACAGCCGCACC
 A C G T A C G T A C G T A C G T C G T A A C G T C G T A A C T G C G T A A G T C A C T G A G T C A C G T A G T C A C G T
T C G A T A C G T G A C T C G A T G C A G A T C T C G A C T A G T G A C T A G C A T C G T A G C C T G A T G A C G A T C

PB0143.1_Klf7_2/Jaspar

Match Rank:2
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--ATAGACGCTC-----
AAGCATACGCCCAACTT
 A C G T A C G T C G T A A C G T C G T A A C T G C G T A A G T C A C T G A G T C A C G T A G T C A C G T A C G T A C G T A C G T A C G T
T G C A T C G A C T A G A G T C C G T A C G A T G T C A A G T C C T A G T A G C T A G C G A T C G T C A C G T A G T A C G C A T C A G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:ATAGACGCTC
CCAGACRSVB
 C G T A A C G T C G T A A C T G C G T A A G T C A C T G A G T C A C G T A G T C
T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

POL010.1_DCE_S_III/Jaspar

Match Rank:4
Score:0.56
Offset:5
Orientation:reverse strand
Alignment:ATAGACGCTC
-----NGCTN
 C G T A A C G T C G T A A C T G C G T A A G T C A C T G A G T C A C G T A G T C
A C G T A C G T A C G T A C G T A C G T T A C G A C T G A G T C A C G T A T C G

BARHL2/MA0635.1/Jaspar

Match Rank:5
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-ATAGACGCTC
GCTAAACGGT-
 A C G T C G T A A C G T C G T A A C T G C G T A A G T C A C T G A G T C A C G T A G T C
T A C G G A T C C G A T C G T A C G T A C G T A G A T C C T A G T C A G G A C T A C G T

POL013.1_MED-1/Jaspar

Match Rank:6
Score:0.54
Offset:6
Orientation:forward strand
Alignment:ATAGACGCTC--
------GCTCCG
 C G T A A C G T C G T A A C T G C G T A A G T C A C T G A G T C A C G T A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G T C A C G T A G T C A G T C A T C G

SMAD3/MA0795.1/Jaspar

Match Rank:7
Score:0.53
Offset:-3
Orientation:reverse strand
Alignment:---ATAGACGCTC
TGTCTAGACG---
 A C G T A C G T A C G T C G T A A C G T C G T A A C T G C G T A A G T C A C T G A G T C A C G T A G T C
C G A T C A T G C A G T T A G C A C G T T C G A A T C G G C T A G A T C C T A G A C G T A C G T A C G T

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:8
Score:0.52
Offset:2
Orientation:forward strand
Alignment:ATAGACGCTC---
--AGCCACTCAAG
 C G T A A C G T C G T A A C T G C G T A A G T C A C T G A G T C A C G T A G T C A C G T A C G T A C G T
A C G T A C G T C T G A C T A G T A G C A G T C G C T A A G T C A C G T A G T C G T C A C T G A T A C G

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.49
Offset:0
Orientation:reverse strand
Alignment:ATAGACGCTC
CCAGACAG--
 C G T A A C G T C G T A A C T G C G T A A G T C A C T G A G T C A C G T A G T C
A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T

PB0008.1_E2F2_1/Jaspar

Match Rank:10
Score:0.49
Offset:-2
Orientation:forward strand
Alignment:--ATAGACGCTC---
ATAAAGGCGCGCGAT
 A C G T A C G T C G T A A C G T C G T A A C T G C G T A A G T C A C T G A G T C A C G T A G T C A C G T A C G T A C G T
C T G A G C A T C G T A G C T A C T G A T A C G A T C G T G A C A T C G A T G C A T C G G A T C T A C G G C T A G C A T