Information for 17-TTGACCTACA (Motif 31)

A G C T A C G T C T A G G T C A T G A C A G T C A C G T C G T A G T A C C G T A
Reverse Opposite:
A C G T A C T G A C G T C G T A A C T G A C T G C A G T A G T C C G T A C T G A
p-value:1e-10
log p-value:-2.398e+01
Information Content per bp:1.846
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.18%
Number of Background Sequences with motif2.8
Percentage of Background Sequences with motif0.07%
Average Position of motif in Targets47.2 +/- 36.0bp
Average Position of motif in Background44.3 +/- 18.8bp
Strand Bias (log2 ratio + to - strand density)1.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RORA(var.2)/MA0072.1/Jaspar

Match Rank:1
Score:0.78
Offset:0
Orientation:reverse strand
Alignment:TTGACCTACA----
TTGACCTANTTATN
 A G C T A C G T C T A G G T C A T G A C A G T C A C G T C G T A G T A C C G T A A C G T A C G T A C G T A C G T
A G C T A C G T A C T G C G T A A G T C A G T C A G C T C G T A T A G C C G A T A C G T G C T A G C A T C G T A

RORA/MA0071.1/Jaspar

Match Rank:2
Score:0.75
Offset:1
Orientation:reverse strand
Alignment:TTGACCTACA-
-TGACCTTGAT
 A G C T A C G T C T A G G T C A T G A C A G T C A C G T C G T A G T A C C G T A A C G T
A C G T A C G T A C T G C G T A A G T C A G T C A G C T G C A T A C T G C G T A G C A T

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:3
Score:0.74
Offset:1
Orientation:reverse strand
Alignment:TTGACCTACA-
-TGACCTARTT
 A G C T A C G T C T A G G T C A T G A C A G T C A C G T C G T A G T A C C G T A A C G T
A C G T A G C T C T A G T C G A A G T C A T G C A G C T T G C A T C A G G C A T C G A T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:4
Score:0.71
Offset:1
Orientation:reverse strand
Alignment:TTGACCTACA
-TGACCT---
 A G C T A C G T C T A G G T C A T G A C A G T C A C G T C G T A G T A C C G T A
A C G T A C G T C A T G G C T A G T A C G T A C G A C T A C G T A C G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:5
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:TTGACCTACA
-TGACCTYA-
 A G C T A C G T C T A G G T C A T G A C A G T C A C G T C G T A G T A C C G T A
A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A A C G T

Esrrg/MA0643.1/Jaspar

Match Rank:6
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:TTGACCTACA
ATGACCTTGA
 A G C T A C G T C T A G G T C A T G A C A G T C A C G T C G T A G T A C C G T A
C G T A G A C T T C A G G T C A T A G C G T A C A G C T G A C T A T C G C T G A

NR4A2/MA0160.1/Jaspar

Match Rank:7
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:TTGACCTACA
GTGACCTT--
 A G C T A C G T C T A G G T C A T G A C A G T C A C G T C G T A G T A C C G T A
A C T G A C G T C T A G C G T A A G T C G T A C A G C T A G C T A C G T A C G T

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.66
Offset:0
Orientation:forward strand
Alignment:TTGACCTACA
NTGACCTTGA
 A G C T A C G T C T A G G T C A T G A C A G T C A C G T C G T A G T A C C G T A
C A T G A G C T T A C G G T C A G T A C T A G C A G C T G A C T A T C G T C G A

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:9
Score:0.66
Offset:-5
Orientation:reverse strand
Alignment:-----TTGACCTACA
TGACCTTGACCT---
 A C G T A C G T A C G T A C G T A C G T A G C T A C G T C T A G G T C A T G A C A G T C A C G T C G T A G T A C C G T A
G A C T T A C G G C T A T G A C A G T C A G C T A C G T C T A G T C G A G T A C G T A C A G C T A C G T A C G T A C G T

ESRRB/MA0141.3/Jaspar

Match Rank:10
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-TTGACCTACA
NATGACCTTGA
 A C G T A G C T A C G T C T A G G T C A T G A C A G T C A C G T C G T A G T A C C G T A
C G A T C G T A G A C T C T A G T C G A T A G C A G T C A G C T C G A T A T C G C T G A