Information for 19-CWCTCTTGGCCAG (Motif 28)

G T A C G C A T A T G C A C G T A G T C A G C T C G A T A C T G A C T G A G T C G A T C C T G A A C T G
Reverse Opposite:
T G A C A G C T C T A G A C T G A G T C G T A C C G T A C T G A C T A G C G T A T A C G C G T A A C T G
p-value:1e-11
log p-value:-2.591e+01
Information Content per bp:1.734
Number of Target Sequences with motif12.0
Percentage of Target Sequences with motif1.41%
Number of Background Sequences with motif3.3
Percentage of Background Sequences with motif0.08%
Average Position of motif in Targets27.4 +/- 19.3bp
Average Position of motif in Background34.8 +/- 24.9bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIC/MA0161.1/Jaspar

Match Rank:1
Score:0.65
Offset:5
Orientation:forward strand
Alignment:CWCTCTTGGCCAG
-----TTGGCA--
 G T A C G C A T A T G C A C G T A G T C A G C T C G A T A C T G A C T G A G T C G A T C C T G A A C T G
A C G T A C G T A C G T A C G T A C G T G A C T C A G T T C A G C T A G G T A C C G T A A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:2
Score:0.65
Offset:4
Orientation:reverse strand
Alignment:CWCTCTTGGCCAG
----NTTGGCANN
 G T A C G C A T A T G C A C G T A G T C A G C T C G A T A C T G A C T G A G T C G A T C C T G A A C T G
A C G T A C G T A C G T A C G T A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G

NFIA/MA0670.1/Jaspar

Match Rank:3
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:CWCTCTTGGCCAG
---NNTTGGCANN
 G T A C G C A T A T G C A C G T A G T C A G C T C G A T A C T G A C T G A G T C G A T C C T G A A C T G
A C G T A C G T A C G T G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:4
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:CWCTCTTGGCCAG
----CTTGGCAA-
 G T A C G C A T A T G C A C G T A G T C A G C T C G A T A C T G A C T G A G T C G A T C C T G A A C T G
A C G T A C G T A C G T A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T

CTCF/MA0139.1/Jaspar

Match Rank:5
Score:0.55
Offset:-7
Orientation:reverse strand
Alignment:-------CWCTCTTGGCCAG
TAGCGCCCCCTGGTGGCCA-
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T G T A C G C A T A T G C A C G T A G T C A G C T C G A T A C T G A C T G A G T C G A T C C T G A A C T G
A G C T C T G A A T C G G A T C C A T G G T A C G A T C G T A C G A T C G A T C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A A C G T

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:6
Score:0.54
Offset:4
Orientation:reverse strand
Alignment:CWCTCTTGGCCAG
----CTAGGCCT-
 G T A C G C A T A T G C A C G T A G T C A G C T C G A T A C T G A C T G A G T C G A T C C T G A A C T G
A C G T A C G T A C G T A C G T T A G C A G C T C T G A A C T G A T C G A T G C G T A C A C G T A C G T

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:7
Score:0.54
Offset:-8
Orientation:forward strand
Alignment:--------CWCTCTTGGCCAG
ANAGTGCCACCTGGTGGCCA-
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G T A C G C A T A T G C A C G T A G T C A G C T C G A T A C T G A C T G A G T C G A T C C T G A A C T G
T G C A A G C T C T G A A T C G G A C T C T A G G T A C G A T C G T C A A G T C G T A C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A A C G T

POL004.1_CCAAT-box/Jaspar

Match Rank:8
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:CWCTCTTGGCCAG-
--TGATTGGCTANN
 G T A C G C A T A T G C A C G T A G T C A G C T C G A T A C T G A C T G A G T C G A T C C T G A A C T G A C G T
A C G T A C G T A G C T A T C G G C T A G C A T A C G T C T A G T A C G G A T C G A C T C T G A T C A G C A G T

PB0145.1_Mafb_2/Jaspar

Match Rank:9
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:CWCTCTTGGCCAG--
ANATTTTTGCAANTN
 G T A C G C A T A T G C A C G T A G T C A G C T C G A T A C T G A C T G A G T C G A T C C T G A A C T G A C G T A C G T
C G T A G A C T C G T A C G A T G C A T C G A T G C A T A G C T C T A G T A G C T G C A T G C A G C A T A G C T C A T G

PB0140.1_Irf6_2/Jaspar

Match Rank:10
Score:0.52
Offset:-2
Orientation:forward strand
Alignment:--CWCTCTTGGCCAG
ACCACTCTCGGTCAC
 A C G T A C G T G T A C G C A T A T G C A C G T A G T C A G C T C G A T A C T G A C T G A G T C G A T C C T G A A C T G
T G C A A G T C A G T C G C T A G T A C C A G T A T G C A G C T A G T C C T A G T C A G C A G T G A T C C T G A T A G C