Information for 3-AGGCCCGCTGCGC (Motif 4)

G C T A A C T G A C T G A G T C A G T C A T G C A C T G A G T C G A C T A C T G A G T C C T A G A G T C
Reverse Opposite:
A C T G A G T C A C T G A G T C C T G A A C T G A G T C A T C G A C T G A C T G A G T C G T A C C G A T
p-value:1e-10
log p-value:-2.347e+01
Information Content per bp:1.891
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.10%
Number of Background Sequences with motif24.8
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets45.9 +/- 25.3bp
Average Position of motif in Background48.5 +/- 32.1bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0207.1_Zic3_2/Jaspar

Match Rank:1
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:AGGCCCGCTGCGC--
NNTCCTGCTGTGNNN
 G C T A A C T G A C T G A G T C A G T C A T G C A C T G A G T C G A C T A C T G A G T C C T A G A G T C A C G T A C G T
G C A T A T C G C A G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G G A C T A C T G G A T C G C A T G T A C

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:2
Score:0.67
Offset:3
Orientation:forward strand
Alignment:AGGCCCGCTGCGC
---CCTGCTGAGH
 G C T A A C T G A C T G A G T C A G T C A T G C A C T G A G T C G A C T A C T G A G T C C T A G A G T C
A C G T A C G T A C G T A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A

PB0205.1_Zic1_2/Jaspar

Match Rank:3
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:AGGCCCGCTGCGC--
TNTCCTGCTGTGNNG
 G C T A A C T G A C T G A G T C A G T C A T G C A C T G A G T C G A C T A C T G A G T C C T A G A G T C A C G T A C G T
G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G

PB0206.1_Zic2_2/Jaspar

Match Rank:4
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:AGGCCCGCTGCGC--
TCNCCTGCTGNGNNN
 G C T A A C T G A C T G A G T C A G T C A T G C A C T G A G T C G A C T A C T G A G T C C T A G A G T C A C G T A C G T
G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:5
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--AGGCCCGCTGCGC
GGCCYCCTGCTGDGH
 A C G T A C G T G C T A A C T G A C T G A G T C A G T C A T G C A C T G A G T C G A C T A C T G A G T C C T A G A G T C
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C

POL006.1_BREu/Jaspar

Match Rank:6
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:AGGCCCGCTGCGC
-GGCGCGCT----
 G C T A A C T G A C T G A G T C A G T C A T G C A C T G A G T C G A C T A C T G A G T C C T A G A G T C
A C G T C T A G T A C G A G T C A C T G A G T C A T C G A T G C A C G T A C G T A C G T A C G T A C G T

ZIC3/MA0697.1/Jaspar

Match Rank:7
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--AGGCCCGCTGCGC
GACCCCCCGCTGCGC
 A C G T A C G T G C T A A C T G A C T G A G T C A G T C A T G C A C T G A G T C G A C T A C T G A G T C C T A G A G T C
A C T G T C G A G T A C G A T C G T A C A G T C A G T C A G T C T C A G A G T C A C G T C A T G G A T C C A T G G T A C

PB0199.1_Zfp161_2/Jaspar

Match Rank:8
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:AGGCCCGCTGCGC---
--NNGCNCTGCGCGGC
 G C T A A C T G A C T G A G T C A G T C A T G C A C T G A G T C G A C T A C T G A G T C C T A G A G T C A C G T A C G T A C G T
A C G T A C G T T C G A A G T C C A T G G A T C T G C A G A T C C A G T A C T G A G T C C T A G A T G C C T A G C T A G G T A C

TFAP2C(var.3)/MA0815.1/Jaspar

Match Rank:9
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:AGGCCCGCTGCGC-
-TGCCCTNAGGGCA
 G C T A A C T G A C T G A G T C A G T C A T G C A C T G A G T C G A C T A C T G A G T C C T A G A G T C A C G T
A C G T G C A T A T C G A G T C A G T C A G T C A G C T T A G C T C G A T C A G A C T G A C T G A T G C C G T A

TFAP2A(var.3)/MA0872.1/Jaspar

Match Rank:10
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:AGGCCCGCTGCGC-
-TGCCCNNAGGGCA
 G C T A A C T G A C T G A G T C A G T C A T G C A C T G A G T C G A C T A C T G A G T C C T A G A G T C A C G T
A C G T G C A T A T C G A G T C A G T C A G T C A G C T T A G C T C G A T C A G A C T G A C T G A T G C C G T A