Information for 9-ACGCACAAAA (Motif 11)

C G T A A T G C T A C G A G T C C T G A A T G C C G T A C G T A G T C A T C G A
Reverse Opposite:
A C G T A C G T A C G T A C G T A T C G A G C T A C T G A T G C A T C G A C G T
p-value:1e-8
log p-value:-2.036e+01
Information Content per bp:1.862
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.22%
Number of Background Sequences with motif43.0
Percentage of Background Sequences with motif0.09%
Average Position of motif in Targets47.5 +/- 28.1bp
Average Position of motif in Background48.0 +/- 29.5bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0208.1_Zscan4_2/Jaspar

Match Rank:1
Score:0.73
Offset:-2
Orientation:forward strand
Alignment:--ACGCACAAAA----
CGAAGCACACAAAATA
 A C G T A C G T C G T A A T G C T A C G A G T C C T G A A T G C C G T A C G T A G T C A T C G A A C G T A C G T A C G T A C G T
G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:2
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:ACGCACAAAA-
-VRRACAAWGG
 C G T A A T G C T A C G A G T C C T G A A T G C C G T A C G T A G T C A T C G A A C G T
A C G T T A G C C T A G T C G A C G T A A G T C C G T A C T G A C G T A C T A G T A C G

PB0143.1_Klf7_2/Jaspar

Match Rank:3
Score:0.62
Offset:-6
Orientation:forward strand
Alignment:------ACGCACAAAA-
AAGCATACGCCCAACTT
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A A T G C T A C G A G T C C T G A A T G C C G T A C G T A G T C A T C G A A C G T
T G C A T C G A C T A G A G T C C G T A C G A T G T C A A G T C C T A G T A G C T A G C G A T C G T C A C G T A G T A C G C A T C A G T

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:4
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-ACGCACAAAA
CACGCA-----
 A C G T C G T A A T G C T A C G A G T C C T G A A T G C C G T A C G T A G T C A T C G A
A G T C C G T A G T A C C T A G G T A C C T G A A C G T A C G T A C G T A C G T A C G T

Sox3/MA0514.1/Jaspar

Match Rank:5
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:ACGCACAAAA-
-AAAACAAAGG
 C G T A A T G C T A C G A G T C C T G A A T G C C G T A C G T A G T C A T C G A A C G T
A C G T T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G

SOX10/MA0442.1/Jaspar

Match Rank:6
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:ACGCACAAAA
----ACAAAG
 C G T A A T G C T A C G A G T C C T G A A T G C C G T A C G T A G T C A T C G A
A C G T A C G T A C G T A C G T G T C A A T G C C G T A T G C A C G T A C T A G

PB0130.1_Gm397_2/Jaspar

Match Rank:7
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--ACGCACAAAA----
AGCGGCACACACGCAA
 A C G T A C G T C G T A A T G C T A C G A G T C C T G A A T G C C G T A C G T A G T C A T C G A A C G T A C G T A C G T A C G T
C T G A T C A G G T A C T C A G C T A G T G A C C T G A G A T C T C G A A T G C T G C A G T A C A C T G G A T C T G C A G T C A

RUNX1/MA0002.2/Jaspar

Match Rank:8
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-ACGCACAAAA
AAACCACAGAN
 A C G T C G T A A T G C T A C G A G T C C T G A A T G C C G T A C G T A G T C A T C G A
G C T A C T G A T C G A T G A C G T A C C T G A T A G C G C T A T C A G T C G A T G A C

HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer

Match Rank:9
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:ACGCACAAAA
CCYMATAAAA
 C G T A A T G C T A C G A G T C C T G A A T G C C G T A C G T A G T C A T C G A
T G A C A T G C A G T C G T C A C T G A A C G T C G T A C G T A C G T A G C T A

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:10
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:ACGCACAAAA-
---RACAAWGG
 C G T A A T G C T A C G A G T C C T G A A T G C C G T A C G T A G T C A T C G A A C G T
A C G T A C G T A C G T T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G