Information for 3-GAGAGCAGAGAGABCT (Motif 5)

A C T G C G T A A T C G C G T A A T C G A G T C C G T A A T C G C G T A A T C G C T G A A C T G G T C A A G T C A G T C A G C T
Reverse Opposite:
T C G A A C T G T A C G A C G T A G T C A G C T A T G C A C G T A T G C A C G T A C T G A T G C A C G T A T G C A C G T A G T C
p-value:1e-13
log p-value:-3.095e+01
Information Content per bp:1.815
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.72%
Number of Background Sequences with motif2.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets37.7 +/- 20.0bp
Average Position of motif in Background60.1 +/- 24.4bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer

Match Rank:1
Score:0.55
Offset:1
Orientation:forward strand
Alignment:GAGAGCAGAGAGABCT
-ACATCAAAGGNA---
 A C T G C G T A A T C G C G T A A T C G A G T C C G T A A T C G C G T A A T C G C T G A A C T G G T C A A G T C A G T C A G C T
A C G T C T G A A T G C G C T A G C A T A T G C C G T A T C G A C T G A C T A G T C A G T A C G G T C A A C G T A C G T A C G T

LEF1/MA0768.1/Jaspar

Match Rank:2
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-GAGAGCAGAGAGABCT
AAAGATCAAAGGGTT--
 A C G T A C T G C G T A A T C G C G T A A T C G A G T C C G T A A T C G C G T A A T C G C T G A A C T G G T C A A G T C A G T C A G C T
T C G A C T G A C T G A T A C G C G T A G C A T T A G C C G T A C T G A C T G A T C A G T C A G T C A G C G A T G C A T A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.54
Offset:4
Orientation:reverse strand
Alignment:GAGAGCAGAGAGABCT
----CCAGACRSVB--
 A C T G C G T A A T C G C G T A A T C G A G T C C G T A A T C G C G T A A T C G C T G A A C T G G T C A A G T C A G T C A G C T
A C G T A C G T A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.54
Offset:4
Orientation:reverse strand
Alignment:GAGAGCAGAGAGABCT
----CCAGACAG----
 A C T G C G T A A T C G C G T A A T C G A G T C C G T A A T C G C G T A A T C G C T G A A C T G G T C A A G T C A G T C A G C T
A C G T A C G T A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T A C G T A C G T

PB0040.1_Lef1_1/Jaspar

Match Rank:5
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--GAGAGCAGAGAGABCT
NANAGATCAAAGGGNNN-
 A C G T A C G T A C T G C G T A A T C G C G T A A T C G A G T C C G T A A T C G C G T A A T C G C T G A A C T G G T C A A G T C A G T C A G C T
A C T G G C T A G C A T C G T A A T C G C G T A C G A T T A G C C G T A C G T A C G T A T C A G T C A G T C A G G C T A G A C T G A C T A C G T

RUNX1/MA0002.2/Jaspar

Match Rank:6
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:GAGAGCAGAGAGABCT
-AAACCACAGAN----
 A C T G C G T A A T C G C G T A A T C G A G T C C G T A A T C G C G T A A T C G C T G A A C T G G T C A A G T C A G T C A G C T
A C G T G C T A C T G A T C G A T G A C G T A C C T G A T A G C G C T A T C A G T C G A T G A C A C G T A C G T A C G T A C G T

RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer

Match Rank:7
Score:0.52
Offset:0
Orientation:forward strand
Alignment:GAGAGCAGAGAGABCT
NAAACCACAG------
 A C T G C G T A A T C G C G T A A T C G A G T C C G T A A T C G C G T A A T C G C T G A A C T G G T C A A G T C A G T C A G C T
T A G C G C T A T C G A C T G A A G T C A G T C C T G A A G T C C G T A C T A G A C G T A C G T A C G T A C G T A C G T A C G T

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:8
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:GAGAGCAGAGAGABCT
-AAACCACAGC-----
 A C T G C G T A A T C G C G T A A T C G A G T C C G T A A T C G C G T A A T C G C T G A A C T G G T C A A G T C A G T C A G C T
A C G T G C T A T C G A T G C A T G A C G T A C T G C A A G T C C T G A C T A G T G A C A C G T A C G T A C G T A C G T A C G T

TCF7L2/MA0523.1/Jaspar

Match Rank:9
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-GAGAGCAGAGAGABCT
AAAGATCAAAGGAA---
 A C G T A C T G C G T A A T C G C G T A A T C G A G T C C G T A A T C G C G T A A T C G C T G A A C T G G T C A A G T C A G T C A G C T
C T G A T C G A C T G A A T C G G C T A C G A T T A G C C G T A T C G A C T G A T C A G T C A G T C G A G T C A A C G T A C G T A C G T

PB0084.1_Tcf7l2_1/Jaspar

Match Rank:10
Score:0.51
Offset:-2
Orientation:reverse strand
Alignment:--GAGAGCAGAGAGABCT
NNNAGATCAAAGGANNN-
 A C G T A C G T A C T G C G T A A T C G C G T A A T C G A G T C C G T A A T C G C G T A A T C G C T G A A C T G G T C A A G T C A G T C A G C T
A C G T G C T A G C A T C G T A A T C G C G T A C G A T T A G C C G T A C G T A C G T A T C A G T C A G T C G A G T C A G C T A G C A T A C G T