Information for 12-CMCSTGCWGSSMCGCK (Motif 25)

A G T C G T A C A T G C A T C G A G C T A C T G A G T C C G T A A C T G A T C G A T G C T G A C A G T C A C T G A G T C A C T G
Reverse Opposite:
G T A C A C T G G T A C T C A G A C T G A T C G A T G C A G T C C G A T A C T G A G T C C T G A A T G C A T C G A C T G A C T G
p-value:1e-9
log p-value:-2.210e+01
Information Content per bp:1.801
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.93%
Number of Background Sequences with motif4.7
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets49.4 +/- 14.7bp
Average Position of motif in Background60.6 +/- 11.0bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:1
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---CMCSTGCWGSSMCGCK
GGCCYCCTGCTGDGH----
 A C G T A C G T A C G T A G T C G T A C A T G C A T C G A G C T A C T G A G T C C G T A A C T G A T C G A T G C T G A C A G T C A C T G A G T C A C T G
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C A C G T A C G T A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:2
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-CMCSTGCWGSSMCGCK
CCCCCTGCTGTG-----
 A C G T A G T C G T A C A T G C A T C G A G C T A C T G A G T C C G T A A C T G A T C G A T G C T G A C A G T C A C T G A G T C A C T G
G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G A C G T A C G T A C G T A C G T A C G T

PB0206.1_Zic2_2/Jaspar

Match Rank:3
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-CMCSTGCWGSSMCGCK
TCNCCTGCTGNGNNN--
 A C G T A G T C G T A C A T G C A T C G A G C T A C T G A G T C C G T A A C T G A T C G A T G C T G A C A G T C A C T G A G T C A C T G
G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G A C G T A C G T

Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer

Match Rank:4
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---CMCSTGCWGSSMCGCK
SNGCACCTGCHS-------
 A C G T A C G T A C G T A G T C G T A C A T G C A T C G A G C T A C T G A G T C C G T A A C T G A T C G A T G C T G A C A G T C A C T G A G T C A C T G
T A C G C T A G T A C G A G T C C G T A A G T C A G T C A C G T A C T G A G T C G A T C T A G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:5
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-CMCSTGCWGSSMCGCK
TNTCCTGCTGTGNNG--
 A C G T A G T C G T A C A T G C A T C G A G C T A C T G A G T C C G T A A C T G A T C G A T G C T G A C A G T C A C T G A G T C A C T G
G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G A C G T A C G T

Id2/MA0617.1/Jaspar

Match Rank:6
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-CMCSTGCWGSSMCGCK
TCACGTGC---------
 A C G T A G T C G T A C A T G C A T C G A G C T A C T G A G T C C G T A A C T G A T C G A T G C T G A C A G T C A C T G A G T C A C T G
G A C T A G T C C G T A A G T C A C T G A C G T A C T G A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer

Match Rank:7
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---CMCSTGCWGSSMCGCK
NGKCACGTGM---------
 A C G T A C G T A C G T A G T C G T A C A T G C A T C G A G C T A C T G A G T C C G T A A C T G A T C G A T G C T G A C A G T C A C T G A G T C A C T G
T C G A T C A G C A T G A G T C C G T A A G T C C T A G A C G T A C T G G T A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

MNT/MA0825.1/Jaspar

Match Rank:8
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--CMCSTGCWGSSMCGCK
ACCACGTGCC--------
 A C G T A C G T A G T C G T A C A T G C A T C G A G C T A C T G A G T C C G T A A C T G A T C G A T G C T G A C A G T C A C T G A G T C A C T G
C T G A T A G C G T A C C G T A A G T C C T A G A C G T A C T G T G A C G A T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Mlxip/MA0622.1/Jaspar

Match Rank:9
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-CMCSTGCWGSSMCGCK
ACACGTGC---------
 A C G T A G T C G T A C A T G C A T C G A G C T A C T G A G T C C G T A A C T G A T C G A T G C T G A C A G T C A C T G A G T C A C T G
G T C A A G T C C G T A A G T C A C T G A C G T A C T G T A G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:10
Score:0.56
Offset:2
Orientation:forward strand
Alignment:CMCSTGCWGSSMCGCK
--CCTGCTGAGH----
 A G T C G T A C A T G C A T C G A G C T A C T G A G T C C G T A A C T G A T C G A T G C T G A C A G T C A C T G A G T C A C T G
A C G T A C G T A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A A C G T A C G T A C G T A C G T