Information for 13-CCTGCCAGAKCTC (Motif 18)

A G T C A G T C A C G T A C T G A G T C A G T C C G T A A T C G C G T A A C G T A G T C A C G T A G T C
Reverse Opposite:
A C T G G T C A T A C G G T A C C G A T A T G C C G A T A C T G A C T G A G T C C G T A A C T G A C T G
p-value:1e-11
log p-value:-2.754e+01
Information Content per bp:1.837
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.93%
Number of Background Sequences with motif2.4
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets58.8 +/- 28.2bp
Average Position of motif in Background56.5 +/- 21.3bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.12
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:CCTGCCAGAKCTC
CTTGGCAA-----
 A G T C A G T C A C G T A C T G A G T C A G T C C G T A A T C G C G T A A C G T A G T C A C G T A G T C
A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:2
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:CCTGCCAGAKCTC
-ATGCCAGACN--
 A G T C A G T C A C G T A C T G A G T C A G T C C G T A A T C G C G T A A C G T A G T C A C G T A G T C
A C G T C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C A C G T A C G T

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:3
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---CCTGCCAGAKCTC
NNACTTGCCTT-----
 A C G T A C G T A C G T A G T C A G T C A C G T A C T G A G T C A G T C C G T A A T C G C G T A A C G T A G T C A C G T A G T C
T C G A G A T C T G C A A G T C G A C T A G C T A C T G A G T C G A T C G C A T A C G T A C G T A C G T A C G T A C G T A C G T

PB0164.1_Smad3_2/Jaspar

Match Rank:4
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----CCTGCCAGAKCTC
TACGCCCCGCCACTCTG-
 A C G T A C G T A C G T A C G T A C G T A G T C A G T C A C G T A C T G A G T C A G T C C G T A A T C G C G T A A C G T A G T C A C G T A G T C
C A G T G T C A G T A C A C T G G A T C A G T C T A G C A T G C T A C G A G T C G T A C G T C A G T A C G A C T A G T C G A C T A C T G A C G T

NFIX/MA0671.1/Jaspar

Match Rank:5
Score:0.59
Offset:0
Orientation:forward strand
Alignment:CCTGCCAGAKCTC
CGTGCCAAG----
 A G T C A G T C A C G T A C T G A G T C A G T C C G T A A T C G C G T A A C G T A G T C A C G T A G T C
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:6
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:CCTGCCAGAKCTC
--TGCCAA-----
 A G T C A G T C A C G T A C T G A G T C A G T C C G T A A T C G C G T A A C G T A G T C A C G T A G T C
A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T A C G T A C G T

Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer

Match Rank:7
Score:0.58
Offset:-5
Orientation:forward strand
Alignment:-----CCTGCCAGAKCTC
SNGCACCTGCHS------
 A C G T A C G T A C G T A C G T A C G T A G T C A G T C A C G T A C T G A G T C A G T C C G T A A T C G C G T A A C G T A G T C A C G T A G T C
T A C G C T A G T A C G A G T C C G T A A G T C A G T C A C G T A C T G A G T C G A T C T A G C A C G T A C G T A C G T A C G T A C G T A C G T

Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer

Match Rank:8
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-CCTGCCAGAKCTC-
GYCTGGYYTNTGTCA
 A C G T A G T C A G T C A C G T A C T G A G T C A G T C C G T A A T C G C G T A A C G T A G T C A C G T A G T C A C G T
A T C G A G C T A G T C A C G T A C T G A T C G A G C T G A C T G C A T A G C T G A C T T A C G A G C T G A T C G C T A

SNAI2/MA0745.1/Jaspar

Match Rank:9
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---CCTGCCAGAKCTC
NCACCTGTN-------
 A C G T A C G T A C G T A G T C A G T C A C G T A C T G A G T C A G T C C G T A A T C G C G T A A C G T A G T C A C G T A G T C
T C G A G T A C C T G A G A T C G A T C C G A T C A T G G A C T G A C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

MEIS2/MA0774.1/Jaspar

Match Rank:10
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:CCTGCCAGAKCTC
GCTGTCAA-----
 A G T C A G T C A C G T A C T G A G T C A G T C C G T A A T C G C G T A A C G T A G T C A C G T A G T C
A T C G A T G C A C G T C A T G G C A T A G T C G T C A G C T A A C G T A C G T A C G T A C G T A C G T