Information for 5-CGCCTGCAGGBGG (Motif 6)

T A G C T C A G A G T C A G T C G C A T T A C G A T G C C G T A T A C G T A C G A G T C A T C G A T C G
Reverse Opposite:
T A G C T A G C T C A G A T G C A T G C G C A T T A C G A T G C C G T A T C A G T C A G A G T C A T C G
p-value:1e-13
log p-value:-3.208e+01
Information Content per bp:1.548
Number of Target Sequences with motif73.0
Percentage of Target Sequences with motif8.43%
Number of Background Sequences with motif1388.7
Percentage of Background Sequences with motif3.02%
Average Position of motif in Targets50.3 +/- 23.4bp
Average Position of motif in Background50.7 +/- 30.7bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.74
Offset:1
Orientation:reverse strand
Alignment:CGCCTGCAGGBGG--------
-GCCASCAGGGGGCGCYVNNG
 T A G C T C A G A G T C A G T C G C A T T A C G A T G C C G T A T A C G T A C G A G T C A T C G A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

CTCF/MA0139.1/Jaspar

Match Rank:2
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-CGCCTGCAGGBGG-----
TGGCCACCAGGGGGCGCTA
 A C G T T A G C T C A G A G T C A G T C G C A T T A C G A T G C C G T A T A C G T A C G A G T C A T C G A T C G A C G T A C G T A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:3
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:CGCCTGCAGGBGG--
DCHCAGCAGGRGGCC
 T A G C T C A G A G T C A G T C G C A T T A C G A T G C C G T A T A C G T A C G A G T C A T C G A T C G A C G T A C G T
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer

Match Rank:4
Score:0.67
Offset:3
Orientation:reverse strand
Alignment:CGCCTGCAGGBGG--
---SDGCAGGTGCNS
 T A G C T C A G A G T C A G T C G C A T T A C G A T G C C G T A T A C G T A C G A G T C A T C G A T C G A C G T A C G T
A C G T A C G T A C G T A T C G C T A G C T A G A G T C C G T A A C T G A C T G A C G T A C T G A T G C G A T C A T G C

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:5
Score:0.66
Offset:1
Orientation:forward strand
Alignment:CGCCTGCAGGBGG
-CACAGCAGGGGG
 T A G C T C A G A G T C A G T C G C A T T A C G A T G C C G T A T A C G T A C G A G T C A T C G A T C G
A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

TFAP2A(var.2)/MA0810.1/Jaspar

Match Rank:6
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:CGCCTGCAGGBGG
TGCCCNGGGGCA-
 T A G C T C A G A G T C A G T C G C A T T A C G A T G C C G T A T A C G T A C G A G T C A T C G A T C G
G A C T T A C G T A G C A G T C A G T C A C T G T C A G T C A G T C A G A T C G A T G C C T G A A C G T

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:7
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-CGCCTGCAGGBGG------
TGGCCACCAGGTGGCACTNT
 A C G T T A G C T C A G A G T C A G T C G C A T T A C G A T G C C G T A T A C G T A C G A G T C A T C G A T C G A C G T A C G T A C G T A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T

E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:8
Score:0.62
Offset:4
Orientation:reverse strand
Alignment:CGCCTGCAGGBGG-
----NNCAGGTGNN
 T A G C T C A G A G T C A G T C G C A T T A C G A T G C C G T A T A C G T A C G A G T C A T C G A T C G A C G T
A C G T A C G T A C G T A C G T C A G T T A C G A G T C C G T A A C T G A C T G A C G T A C T G A C G T T A C G

TFAP2B/MA0811.1/Jaspar

Match Rank:9
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:CGCCTGCAGGBGG
TGCCCTNGGGCA-
 T A G C T C A G A G T C A G T C G C A T T A C G A T G C C G T A T A C G T A C G A G T C A T C G A T C G
G A C T T A C G A T G C A G T C A G T C A G C T T C A G T C A G C T A G A T C G A T G C C T G A A C G T

TCF3/MA0522.2/Jaspar

Match Rank:10
Score:0.61
Offset:4
Orientation:reverse strand
Alignment:CGCCTGCAGGBGG-
----NNCAGGTGTN
 T A G C T C A G A G T C A G T C G C A T T A C G A T G C C G T A T A C G T A C G A G T C A T C G A T C G A C G T
A C G T A C G T A C G T A C G T G T C A T C A G A G T C C G T A A T C G T A C G C G A T A C T G A G C T C A G T