Information for 4-CRRCAGGRGTMAKTRY (Motif 3)

A G T C C T G A C T G A A T G C C G T A T A C G C T A G C T A G C T A G A C G T G T A C C G T A A C T G A C G T T C A G A G T C
Reverse Opposite:
C T A G A G T C C G T A T G A C A C G T A C T G C G T A A G T C A G T C A G T C A G T C A C G T A T C G A G C T G A C T A C T G
p-value:1e-15
log p-value:-3.679e+01
Information Content per bp:1.819
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.83%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets63.7 +/- 16.9bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0118.1_Esrra_2/Jaspar

Match Rank:1
Score:0.65
Offset:0
Orientation:forward strand
Alignment:CRRCAGGRGTMAKTRY-
GGCGAGGGGTCAAGGGC
 A G T C C T G A C T G A A T G C C G T A T A C G C T A G C T A G C T A G A C G T G T A C C G T A A C T G A C G T T C A G A G T C A C G T
T A C G C A T G A T G C A C T G G C T A T A C G T C A G C A T G A C T G C G A T A G T C C T G A G C T A C T A G A T C G A T C G G T A C

ID4/MA0824.1/Jaspar

Match Rank:2
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:CRRCAGGRGTMAKTRY
-GACAGGTGTN-----
 A G T C C T G A C T G A A T G C C G T A T A C G C T A G C T A G C T A G A C G T G T A C C G T A A C T G A C G T T C A G A G T C
A C G T C T A G T C G A A G T C C G T A A T C G A T C G A G C T A C T G A G C T G T C A A C G T A C G T A C G T A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:3
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--CRRCAGGRGTMAKTRY
CACAGCAGGGGG------
 A C G T A C G T A G T C C T G A C T G A A T G C C G T A T A C G C T A G C T A G C T A G A C G T G T A C C G T A A C T G A C G T T C A G A G T C
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G A C G T A C G T A C G T A C G T A C G T A C G T

PKNOX2/MA0783.1/Jaspar

Match Rank:4
Score:0.62
Offset:0
Orientation:forward strand
Alignment:CRRCAGGRGTMAKTRY
TGACAGGTGTCA----
 A G T C C T G A C T G A A T G C C G T A T A C G C T A G C T A G C T A G A C G T G T A C C G T A A C T G A C G T T C A G A G T C
C G A T T A C G C T G A A G T C C G T A C A T G T A C G A G C T T C A G G A C T T G A C C T G A A C G T A C G T A C G T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:5
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---CRRCAGGRGTMAKTRY
DCHCAGCAGGRGGCC----
 A C G T A C G T A C G T A G T C C T G A C T G A A T G C C G T A T A C G C T A G C T A G C T A G A C G T G T A C C G T A A C T G A C G T T C A G A G T C
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C A C G T A C G T A C G T A C G T

PKNOX1/MA0782.1/Jaspar

Match Rank:6
Score:0.60
Offset:0
Orientation:forward strand
Alignment:CRRCAGGRGTMAKTRY
TGACAGGTGTCA----
 A G T C C T G A C T G A A T G C C G T A T A C G C T A G C T A G C T A G A C G T G T A C C G T A A C T G A C G T T C A G A G T C
G A C T T A C G C T G A G T A C C T G A C A T G T A C G A G C T T C A G G C A T T A G C C G T A A C G T A C G T A C G T A C G T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:7
Score:0.60
Offset:4
Orientation:forward strand
Alignment:CRRCAGGRGTMAKTRY
----AGRGGTCA----
 A G T C C T G A C T G A A T G C C G T A T A C G C T A G C T A G C T A G A C G T G T A C C G T A A C T G A C G T T C A G A G T C
A C G T A C G T A C G T A C G T T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T A C G T A C G T A C G T

SCRT2/MA0744.1/Jaspar

Match Rank:8
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---CRRCAGGRGTMAKTRY
ATGCAACAGGTGG------
 A C G T A C G T A C G T A G T C C T G A C T G A A T G C C G T A T A C G C T A G C T A G C T A G A C G T G T A C C G T A A C T G A C G T T C A G A G T C
T C G A G C A T A C T G G T A C T G C A C G T A G T A C G T C A T C A G A T C G G C A T C A T G A T C G A C G T A C G T A C G T A C G T A C G T A C G T

SNAI2/MA0745.1/Jaspar

Match Rank:9
Score:0.59
Offset:1
Orientation:forward strand
Alignment:CRRCAGGRGTMAKTRY
-AACAGGTGT------
 A G T C C T G A C T G A A T G C C G T A T A C G C T A G C T A G C T A G A C G T G T A C C G T A A C T G A C G T T C A G A G T C
A C G T C T G A C T G A G T A C G C T A C T A G C T A G G A C T C A T G A G C T A C G T A C G T A C G T A C G T A C G T A C G T

TBX5/MA0807.1/Jaspar

Match Rank:10
Score:0.59
Offset:4
Orientation:forward strand
Alignment:CRRCAGGRGTMAKTRY
----AGGTGTGA----
 A G T C C T G A C T G A A T G C C G T A T A C G C T A G C T A G C T A G A C G T G T A C C G T A A C T G A C G T T C A G A G T C
A C G T A C G T A C G T A C G T C T G A T C A G A C T G A C G T C T A G A G C T A C T G C T G A A C G T A C G T A C G T A C G T