Information for 9-GGAMCTGCGT (Motif 6)

C A T G T A C G C G T A T G A C G T A C G C A T C A T G A G T C C A T G A G C T
Reverse Opposite:
C T G A G T A C T C A G G T A C C G T A C A T G A C T G G C A T A T G C G T A C
p-value:1e-8
log p-value:-1.991e+01
Information Content per bp:1.650
Number of Target Sequences with motif17.0
Percentage of Target Sequences with motif1.96%
Number of Background Sequences with motif141.2
Percentage of Background Sequences with motif0.30%
Average Position of motif in Targets52.6 +/- 27.2bp
Average Position of motif in Background52.4 +/- 28.0bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:1
Score:0.64
Offset:5
Orientation:forward strand
Alignment:GGAMCTGCGT-
-----TGCGTG
 C A T G T A C G C G T A T G A C G T A C G C A T C A T G A G T C C A T G A G C T A C G T
A C G T A C G T A C G T A C G T A C G T G A C T A C T G A G T C A C T G A C G T A C T G

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:2
Score:0.62
Offset:4
Orientation:reverse strand
Alignment:GGAMCTGCGT----
----TTGCGTGCVA
 C A T G T A C G C G T A T G A C G T A C G C A T C A T G A G T C C A T G A G C T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C A G T A C T G A G T C T C A G C G A T C A T G G T A C T A G C C G T A

PB0136.1_IRC900814_2/Jaspar

Match Rank:3
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--GGAMCTGCGT----
ATGGAAAGTCGTAAAA
 A C G T A C G T C A T G T A C G C G T A T G A C G T A C G C A T C A T G A G T C C A T G A G C T A C G T A C G T A C G T A C G T
C T G A A G C T A C T G C T A G C T G A T C G A G T C A A C T G G A C T A G T C C A T G A C G T C T G A C G T A T C G A G C T A

Atf1/MA0604.1/Jaspar

Match Rank:4
Score:0.57
Offset:5
Orientation:reverse strand
Alignment:GGAMCTGCGT---
-----TACGTCAT
 C A T G T A C G C G T A T G A C G T A C G C A T C A T G A G T C C A T G A G C T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A G C T C T G A A G T C A C T G A C G T T G A C C G T A A G C T

NHLH1/MA0048.2/Jaspar

Match Rank:5
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-GGAMCTGCGT
CGCAGCTGCG-
 A C G T C A T G T A C G C G T A T G A C G T A C G C A T C A T G A G T C C A T G A G C T
T G A C C T A G A T G C T C G A A T C G T A G C A C G T A C T G A G T C A C T G A C G T

PB0161.1_Rxra_2/Jaspar

Match Rank:6
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----GGAMCTGCGT--
NNNNCAACCTTCGNGA
 A C G T A C G T A C G T A C G T C A T G T A C G C G T A T G A C G T A C G C A T C A T G A G T C C A T G A G C T A C G T A C G T
G T C A C A T G G C A T C T G A A G T C T C G A T G C A T G A C G A T C C G A T C G A T A G T C C A T G A G T C A C T G G T C A

HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer

Match Rank:7
Score:0.56
Offset:5
Orientation:forward strand
Alignment:GGAMCTGCGT---
-----TACGTGCV
 C A T G T A C G C G T A T G A C G T A C G C A T C A T G A G T C C A T G A G C T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C T G A G A T C A T C G G A C T T C A G G T A C T A G C

RORA(var.2)/MA0072.1/Jaspar

Match Rank:8
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-GGAMCTGCGT---
TTGACCTANTTATN
 A C G T C A T G T A C G C G T A T G A C G T A C G C A T C A T G A G T C C A T G A G C T A C G T A C G T A C G T
A G C T A C G T A C T G C G T A A G T C A G T C A G C T C G T A T A G C C G A T A C G T G C T A G C A T C G T A

Gmeb1/MA0615.1/Jaspar

Match Rank:9
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-GGAMCTGCGT------
NNNTNGTACGTAANNNN
 A C G T C A T G T A C G C G T A T G A C G T A C G C A T C A T G A G T C C A T G A G C T A C G T A C G T A C G T A C G T A C G T A C G T
A T G C A G T C T C G A G C A T A T G C C A G T C A G T T C G A A G T C C T A G A G C T G T C A G T A C T G C A T G A C C A G T T A G C

PB0027.1_Gmeb1_1/Jaspar

Match Rank:10
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-GGAMCTGCGT------
NNNTNGTACGTAANNNN
 A C G T C A T G T A C G C G T A T G A C G T A C G C A T C A T G A G T C C A T G A G C T A C G T A C G T A C G T A C G T A C G T A C G T
A T G C A G T C T C G A G C A T A T G C C A G T C A G T T C G A A G T C C T A G A G C T G T C A G T A C T G C A T G A C C A G T T A G C