Information for 9-RTAWGWTCWSVGA (Motif 7)

C T G A C G A T C T G A C G A T A C T G C G A T A C G T A G T C C G A T A T C G T C G A C T A G C G T A
Reverse Opposite:
C G A T G A T C A G C T T A G C C G T A C T A G G T C A C G T A A G T C C G A T G A C T C G T A G A C T
p-value:1e-10
log p-value:-2.361e+01
Information Content per bp:1.666
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif1.91%
Number of Background Sequences with motif99.3
Percentage of Background Sequences with motif0.21%
Average Position of motif in Targets41.6 +/- 19.5bp
Average Position of motif in Background50.0 +/- 25.6bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NR4A2/MA0160.1/Jaspar

Match Rank:1
Score:0.59
Offset:2
Orientation:forward strand
Alignment:RTAWGWTCWSVGA
--AAGGTCAC---
 C T G A C G A T C T G A C G A T A C T G C G A T A C G T A G T C C G A T A T C G T C G A C T A G C G T A
A C G T A C G T C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C A C G T A C G T A C G T

PB0053.1_Rara_1/Jaspar

Match Rank:2
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---RTAWGWTCWSVGA
TCTCAAAGGTCACCTG
 A C G T A C G T A C G T C T G A C G A T C T G A C G A T A C T G C G A T A C G T A G T C C G A T A T C G T C G A C T A G C G T A
C A G T G T A C A G C T G T A C G C T A C T G A T C G A A C T G A C T G A C G T A G T C C T G A G A T C T A G C G A C T C A T G

GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer

Match Rank:3
Score:0.55
Offset:-8
Orientation:forward strand
Alignment:--------RTAWGWTCWSVGA
NNNNNBAGATAWYATCTVHN-
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A C G A T C T G A C G A T A C T G C G A T A C G T A G T C C G A T A T C G T C G A C T A G C G T A
C T G A C T G A C T A G T C G A C G T A A T G C C G T A A C T G C G T A A C G T C T G A C G A T A G C T C G T A A C G T A G T C C G A T T A C G G T C A G C A T A C G T

PB0104.1_Zscan4_1/Jaspar

Match Rank:4
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--RTAWGWTCWSVGA--
NTNTATGTGCACATNNN
 A C G T A C G T C T G A C G A T C T G A C G A T A C T G C G A T A C G T A G T C C G A T A T C G T C G A C T A G C G T A A C G T A C G T
C A G T G C A T C G A T C G A T C T G A C G A T T C A G A G C T C T A G A G T C C T G A A G T C G C T A G A C T A C T G C A G T G T C A

PB0026.1_Gm397_1/Jaspar

Match Rank:5
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--RTAWGWTCWSVGA--
NNGTATGTGCACATNNN
 A C G T A C G T C T G A C G A T C T G A C G A T A C T G C G A T A C G T A G T C C G A T A T C G T C G A C T A G C G T A A C G T A C G T
C T G A G T A C C A T G C A G T T C G A C G A T T A C G A G C T C T A G A G T C C T G A A T G C G C T A G C A T G T A C C G A T C A T G

PB0125.1_Gata3_2/Jaspar

Match Rank:6
Score:0.55
Offset:-7
Orientation:reverse strand
Alignment:-------RTAWGWTCWSVGA--
NNNNNCGATANNATCTNNNNAN
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A C G A T C T G A C G A T A C T G C G A T A C G T A G T C C G A T A T C G T C G A C T A G C G T A A C G T A C G T
C A G T C G T A C G T A T A C G A G C T G A T C C T A G T C G A A G C T C T G A T G C A C G T A C T G A C A G T G A T C C G A T T C G A A G T C G C T A C G T A T G C A C T G A

HSF1/MA0486.2/Jaspar

Match Rank:7
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:RTAWGWTCWSVGA
GAACGTTCTAGAA
 C T G A C G A T C T G A C G A T A C T G C G A T A C G T A G T C C G A T A T C G T C G A C T A G C G T A
C T A G G C T A C G T A A G T C T C A G C G A T C A G T A G T C A C G T T C G A A C T G G T C A G C T A

STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer

Match Rank:8
Score:0.54
Offset:3
Orientation:forward strand
Alignment:RTAWGWTCWSVGA--
---NTTTCTNAGAAA
 C T G A C G A T C T G A C G A T A C T G C G A T A C G T A G T C C G A T A T C G T C G A C T A G C G T A A C G T A C G T
A C G T A C G T A C G T C T G A A C G T A C G T A C G T A G T C G A C T C G A T C T G A A C T G C G T A C G T A T C G A

HSF2/MA0770.1/Jaspar

Match Rank:9
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:RTAWGWTCWSVGA
GAANGTTCTAGAA
 C T G A C G A T C T G A C G A T A C T G C G A T A C G T A G T C C G A T A T C G T C G A C T A G C G T A
T C A G C T G A G C T A G A T C T C A G G C A T C A G T G A T C A G C T T C G A A C T G G T C A G C T A

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:10
Score:0.53
Offset:1
Orientation:forward strand
Alignment:RTAWGWTCWSVGA
-TRAGGTCA----
 C T G A C G A T C T G A C G A T A C T G C G A T A C G T A G T C C G A T A T C G T C G A C T A G C G T A
A C G T G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T A C G T