Information for 4-AAGGTGKCACTCT (Motif 3)

G C T A C T G A C T A G C T A G A G C T A C T G A C G T A G T C C T G A A T G C G A C T A T G C A C G T
Reverse Opposite:
C G T A A T C G C T G A A T C G A G C T T C A G G T C A T G A C C T G A G A T C A G T C G A C T C G A T
p-value:1e-34
log p-value:-7.924e+01
Information Content per bp:1.677
Number of Target Sequences with motif44.0
Percentage of Target Sequences with motif5.22%
Number of Background Sequences with motif177.8
Percentage of Background Sequences with motif0.37%
Average Position of motif in Targets56.9 +/- 22.8bp
Average Position of motif in Background52.2 +/- 29.5bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:1
Score:0.68
Offset:1
Orientation:forward strand
Alignment:AAGGTGKCACTCT
-AGGTGTCA----
 G C T A C T G A C T A G C T A G A G C T A C T G A C G T A G T C C T G A A T G C G A C T A T G C A C G T
A C G T C T G A C T A G A T C G A G C T A C T G G A C T A G T C C T G A A C G T A C G T A C G T A C G T

TBX5/MA0807.1/Jaspar

Match Rank:2
Score:0.65
Offset:1
Orientation:forward strand
Alignment:AAGGTGKCACTCT
-AGGTGTGA----
 G C T A C T G A C T A G C T A G A G C T A C T G A C G T A G T C C T G A A T G C G A C T A T G C A C G T
A C G T C T G A T C A G A C T G A C G T C T A G A G C T A C T G C T G A A C G T A C G T A C G T A C G T

TBX4/MA0806.1/Jaspar

Match Rank:3
Score:0.64
Offset:1
Orientation:forward strand
Alignment:AAGGTGKCACTCT
-AGGTGTGA----
 G C T A C T G A C T A G C T A G A G C T A C T G A C G T A G T C C T G A A T G C G A C T A T G C A C G T
A C G T C T G A T C A G T A C G A G C T A C T G G A C T A C T G C T G A A C G T A C G T A C G T A C G T

PB0117.1_Eomes_2/Jaspar

Match Rank:4
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---AAGGTGKCACTCT
GCGGAGGTGTCGCCTC
 A C G T A C G T A C G T G C T A C T G A C T A G C T A G A G C T A C T G A C G T A G T C C T G A A T G C G A C T A T G C A C G T
T A C G A T C G T C A G C T A G C T G A T A C G A T C G A G C T T C A G C G A T G A T C A C T G T A G C A G T C A G C T T A G C

TBX15/MA0803.1/Jaspar

Match Rank:5
Score:0.62
Offset:1
Orientation:forward strand
Alignment:AAGGTGKCACTCT
-AGGTGTGA----
 G C T A C T G A C T A G C T A G A G C T A C T G A C G T A G T C C T G A A T G C G A C T A T G C A C G T
A C G T C T G A C T A G T C A G A C G T A T C G A G C T A C T G C T G A A C G T A C G T A C G T A C G T

TBX1/MA0805.1/Jaspar

Match Rank:6
Score:0.61
Offset:1
Orientation:forward strand
Alignment:AAGGTGKCACTCT
-AGGTGTGA----
 G C T A C T G A C T A G C T A G A G C T A C T G A C G T A G T C C T G A A T G C G A C T A T G C A C G T
A C G T C T G A T C A G A C T G A G C T A T C G G A C T A C T G T G C A A C G T A C G T A C G T A C G T

Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer

Match Rank:7
Score:0.61
Offset:1
Orientation:forward strand
Alignment:AAGGTGKCACTCT
-AGGTGTGAAM--
 G C T A C T G A C T A G C T A G A G C T A C T G A C G T A G T C C T G A A T G C G A C T A T G C A C G T
A C G T C G T A C T A G C A T G A G C T A C T G C G A T A T C G C G T A G T C A G T C A A C G T A C G T

Spz1/MA0111.1/Jaspar

Match Rank:8
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:AAGGTGKCACTCT
--GCTGTTACCCT
 G C T A C T G A C T A G C T A G A G C T A C T G A C G T A G T C C T G A A T G C G A C T A T G C A C G T
A C G T A C G T A C T G T G A C A G C T A T C G G C A T C G A T G C T A G T A C A G T C T A G C A G C T

MGA/MA0801.1/Jaspar

Match Rank:9
Score:0.60
Offset:1
Orientation:forward strand
Alignment:AAGGTGKCACTCT
-AGGTGTGA----
 G C T A C T G A C T A G C T A G A G C T A C T G A C G T A G T C C T G A A T G C G A C T A T G C A C G T
A C G T C T G A T C A G A T C G A G C T C T A G G A C T A C T G C T G A A C G T A C G T A C G T A C G T

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:10
Score:0.59
Offset:-7
Orientation:reverse strand
Alignment:-------AAGGTGKCACTCT
TGGCCACCAGGTGGCACTNT
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C T A C T G A C T A G C T A G A G C T A C T G A C G T A G T C C T G A A T G C G A C T A T G C A C G T
G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T