Information for 6-AGGTGTAATTACA (Motif 5)

C G T A T A C G A T C G C G A T A C T G A C G T C T G A C G T A C G A T C G A T T C G A G T A C T C G A
Reverse Opposite:
A C G T A C T G A G C T G C T A C G T A C G A T A G C T T G C A G T A C G C T A T A G C A T G C G C A T
p-value:1e-12
log p-value:-2.891e+01
Information Content per bp:1.685
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.31%
Number of Background Sequences with motif21.2
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets56.8 +/- 21.8bp
Average Position of motif in Background55.3 +/- 26.1bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0061.1_Hoxb6/Jaspar

Match Rank:1
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-AGGTGTAATTACA--
TATTGGTAATTACCTT
 A C G T C G T A T A C G A T C G C G A T A C T G A C G T C T G A C G T A C G A T C G A T T C G A G T A C T C G A A C G T A C G T
G C A T G C T A C A G T C A G T A T C G A C T G A G C T G T C A C G T A C G A T C A G T C T G A G T A C T A G C C A G T A G C T

PH0022.1_Dlx3/Jaspar

Match Rank:2
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-AGGTGTAATTACA---
TCGCGATAATTACCGAC
 A C G T C G T A T A C G A T C G C G A T A C T G A C G T C T G A C G T A C G A T C G A T T C G A G T A C T C G A A C G T A C G T A C G T
A C G T G T A C T C A G T G A C C A G T C T G A A G C T C G T A C G T A A C G T C A G T C T G A A G T C G T A C T A C G G C T A G T A C

PH0072.1_Hoxc8/Jaspar

Match Rank:3
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-AGGTGTAATTACA--
TTGGGGTAATTAACGT
 A C G T C G T A T A C G A T C G C G A T A C T G A C G T C T G A C G T A C G A T C G A T T C G A G T A C T C G A A C G T A C G T
A C G T G C A T C A T G C T A G C T A G C A T G G A C T G T C A G C T A C A G T C A G T C T G A G T C A A G T C C A T G A C G T

PH0103.1_Meox1/Jaspar

Match Rank:4
Score:0.68
Offset:1
Orientation:forward strand
Alignment:AGGTGTAATTACA----
-GAGGTAATTACCTCAG
 C G T A T A C G A T C G C G A T A C T G A C G T C T G A C G T A C G A T C G A T T C G A G T A C T C G A A C G T A C G T A C G T A C G T
A C G T T C A G T G C A C A T G C A T G G A C T T G C A G C T A C A G T A C G T C T G A A T G C G T A C G A C T A G T C C G T A C T A G

Hoxd3/MA0912.1/Jaspar

Match Rank:5
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-AGGTGTAATTACA--
TTGAGTTAATTAACCT
 A C G T C G T A T A C G A T C G C G A T A C T G A C G T C T G A C G T A C G A T C G A T T C G A G T A C T C G A A C G T A C G T
G A C T C G A T C A T G C T G A C A T G A C G T G A C T G T C A G C T A C A G T A C G T C T G A T G A C G A T C A T G C A G C T

PH0079.1_Hoxd3/Jaspar

Match Rank:6
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-AGGTGTAATTACA--
TTGAGTTAATTAACCT
 A C G T C G T A T A C G A T C G C G A T A C T G A C G T C T G A C G T A C G A T C G A T T C G A G T A C T C G A A C G T A C G T
G A C T C G A T C A T G C T G A C A T G A C G T G A C T G T C A G C T A C A G T A C G T C T G A T G A C G A T C A T G C A G C T

PH0053.1_Hoxa6/Jaspar

Match Rank:7
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-AGGTGTAATTACA--
NTNAGGTAATTACCTT
 A C G T C G T A T A C G A T C G C G A T A C T G A C G T C T G A C G T A C G A T C G A T T C G A G T A C T C G A A C G T A C G T
G T C A C G A T C A G T C T G A C T A G A C T G G A C T G T C A G C T A C A G T C A G T C T G A G T A C G A T C C A G T A G C T

PH0023.1_Dlx4/Jaspar

Match Rank:8
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-AGGTGTAATTACA---
GCGCTATAATTACCGAC
 A C G T C G T A T A C G A T C G C G A T A C T G A C G T C T G A C G T A C G A T C G A T T C G A G T A C T C G A A C G T A C G T A C G T
A C G T G T A C T C A G T G A C C A G T C T G A G A C T C G T A C G T A C G A T A C G T C T G A G T A C G T A C T A C G G C T A G T A C

PH0021.1_Dlx2/Jaspar

Match Rank:9
Score:0.64
Offset:1
Orientation:forward strand
Alignment:AGGTGTAATTACA----
-GGAATAATTACCTCAG
 C G T A T A C G A T C G C G A T A C T G A C G T C T G A C G T A C G A T C G A T T C G A G T A C T C G A A C G T A C G T A C G T A C G T
A C G T T C A G T C A G C T A G C T G A G A C T C G T A C G T A C G A T A C G T C T G A A T G C G A C T G A C T G T A C C T G A A C T G

MEOX2/MA0706.1/Jaspar

Match Rank:10
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:AGGTGTAATTACA
---NTTAATTACN
 C G T A T A C G A T C G C G A T A C T G A C G T C T G A C G T A C G A T C G A T T C G A G T A C T C G A
A C G T A C G T A C G T A C T G G C A T G A C T T C G A G T C A C A G T A C G T C T G A A T G C G A C T